PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g089890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | RAV | ||||||||
Protein Properties | Length: 367aa MW: 41399.4 Da PI: 6.2588 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.2 | 2.6e-10 | 49 | 96 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++ykGV + +g W A+I+ ++r++lg+f +a eAa+ ++ a kl+ Csa17g089890.1 49 TKYKGVVQQQ-NGNWGAQIYAD-----HRRIWLGTFKSAAEAAASYDSASIKLR 96 69****9888.8******9993.....4*********************99997 PP | |||||||
2 | B3 | 87.6 | 1e-27 | 186 | 284 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT................---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f k+ltpsdv+k++rlv+pkk+a +h g ++ ++d++ r+W+++++y+k+s+++v+t+GW+ Fvka++Lke Csa17g089890.1 186 FHKELTPSDVGKLNRLVIPKKHAVKHlpyisddhnekeegetG---GavdDLEDIEFYDREMRQWKFRYCYWKSSQSFVFTRGWNAFVKAKNLKE 277 89*****************************998666555552...05555669***************************************** PP T-EEEEE CS B3 77 gDfvvFk 83 +D++vF+ Csa17g089890.1 278 KDIIVFY 284 ******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.57E-22 | 49 | 109 | No hit | No description |
SMART | SM00380 | 9.3E-15 | 50 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.95 | 50 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-13 | 50 | 108 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-15 | 50 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-30 | 183 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-25 | 184 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.70E-25 | 185 | 284 | No hit | No description |
PROSITE profile | PS50863 | 10.701 | 186 | 301 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-18 | 186 | 301 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-25 | 186 | 284 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MDMDEMSNED KTTTETSGSS DSVLPLMKRV KPTVVVETPP ALSNTVTTTK YKGVVQQQNG 60 NWGAQIYADH RRIWLGTFKS AAEAAASYDS ASIKLRSFDA NSHRNFPWSD FTVHEPDFQK 120 PFTTEAVLNM IKEGSYQHKF RDFLKLRSQM VACINIGGSK QVQGGGGRGE AAQESGNCFS 180 WTTELFHKEL TPSDVGKLNR LVIPKKHAVK HLPYISDDHN EKEEGETGGA VDDLEDIEFY 240 DREMRQWKFR YCYWKSSQSF VFTRGWNAFV KAKNLKEKDI IVFYDCNVPS DAKTLEGQSK 300 NFKMIDVHYF SGNGFMVPEE VNKTAQESSG EEMKTGNVFS SKLEDEEPKS EEKKGGGFML 360 FGVRIQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-25 | 185 | 287 | 13 | 104 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g089890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010479572.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C688 | 0.0 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | R0IGJ8 | 0.0 | R0IGJ8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010479572.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-170 | RAV family protein |