PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g088440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 299aa    MW: 34433.3 Da    PI: 8.8457
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g088440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51e-103784255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykGV     +g W A+I+       +kr++lg+f +a eAa a++ a  kl+g
  Csa17g088440.1 37 KYKGVVKQQ-NGHWGAQIYAD-----HKRIWLGTFKSAAEAATAYDSASIKLRG 84
                    8****8666.8******9993.....4************************998 PP
2B387.88.9e-28167266184
                     EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                     f+k+ltpsdv+k++rlv+pkk+a ++                  g    e+++++++d++ r+W++k++y+k+s+++v+t+GW+ Fvk+++Lke+
  Csa17g088440.1 167 FQKELTPSDVGKLNRLVIPKKYAVKFmpyinddpneileegeigG-A-VEDVEIVFYDRTMRQWKFKCCYWKSSQSFVFTRGWNAFVKEKNLKEK 259
                     99****************************988888777776532.2.3899******************************************* PP

                     -EEEEEE CS
              B3  78 DfvvFkl 84 
                     D++vF+ 
  Csa17g088440.1 260 DIIVFYN 266
                     *****93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-53784IPR001471AP2/ERF domain
SMARTSM003801.3E-1837100IPR001471AP2/ERF domain
PROSITE profilePS5103217.8733794IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-173794IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-143796IPR016177DNA-binding domain
CDDcd000183.94E-233796No hitNo description
Gene3DG3DSA:2.40.330.101.9E-30164266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-27165266IPR015300DNA-binding pseudobarrel domain
CDDcd100177.67E-26166265No hitNo description
SMARTSM010192.2E-18167282IPR003340B3 DNA binding domain
PfamPF023625.7E-25167267IPR003340B3 DNA binding domain
PROSITE profilePS5086311.392167282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTETETFLLR MRLNDEPEKA LVVASATKTA TVPGNIKYKG VVKQQNGHWG AQIYADHKRI  60
WLGTFKSAAE AATAYDSASI KLRGFDANSH RNFPWSDLTV HEPEFQDTYE LESVLNMIRD  120
GSYQHKFRDF LKLRSQMVAR INVGGSKQVR GQADQESDKC FYCTQLFQKE LTPSDVGKLN  180
RLVIPKKYAV KFMPYINDDP NEILEEGEIG GAVEDVEIVF YDRTMRQWKF KCCYWKSSQS  240
FVFTRGWNAF VKEKNLKEKD IIVFYNCDVP SNAKTLEGQS KKFKLIDVHY FPRILSNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2216626413100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g088440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481094.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-171RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLD7KGR61e-180D7KGR6_ARALL; Uncharacterized protein
STRINGXP_010481094.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-163RAV family protein