PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g088420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 319aa    MW: 37014 Da    PI: 9.148
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g088420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.93.3e-104085253
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                    +ykGV +   +g W ++I+       +krf+lg+f +a eAa a++ a  kl
  Csa17g088420.1 40 KYKGVVQLQ-NGHWGVQIYTD-----HKRFWLGTFKSAVEAAMAYDSASIKL 85
                    8****9988.8******9883.....4*******************998776 PP
2B389.72.3e-28149244186
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+ltpsdv+k++rlv+pk++a ++           +g+  e+++++++d++ r+W+++++y+k+s+++v+t+GWk+Fv++++Lk++D++ F+ 
  Csa17g088420.1 149 FQKELTPSDVGKLNRLVIPKRHAVNYmpsisnkekeeEGEIVEGVEIVFYDRTMRQWKFRYCYWKSSQSFVITSGWKSFVREKKLKDKDVISFYT 243
                     99*********************999***998766553344499*************************************************93 PP

                     -S CS
              B3  85 dg 86 
                      +
  Csa17g088420.1 244 -W 244
                     .3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-114097IPR016177DNA-binding domain
CDDcd000186.54E-184097No hitNo description
Gene3DG3DSA:3.30.730.101.7E-134098IPR001471AP2/ERF domain
PfamPF008474.6E-64085IPR001471AP2/ERF domain
PROSITE profilePS5103215.3964097IPR001471AP2/ERF domain
SMARTSM003802.6E-1040103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.5E-31143243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-27145247IPR015300DNA-binding pseudobarrel domain
CDDcd100178.83E-22148242No hitNo description
PfamPF023621.7E-25149245IPR003340B3 DNA binding domain
PROSITE profilePS5086311.688149262IPR003340B3 DNA binding domain
SMARTSM010192.5E-19149259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTETETCLPP KKRMRLNDEP EKAQVVASAT KTVPVRGKVK YKGVVQLQNG HWGVQIYTDH  60
KRFWLGTFKS AVEAAMAYDS ASIKLGRSDV NSYRNFPRSD VTIHEPEFQD RFTTESLLNM  120
IREGSYQQKF RDFLRGEESN KGFSRTELFQ KELTPSDVGK LNRLVIPKRH AVNYMPSISN  180
KEKEEEGEIV EGVEIVFYDR TMRQWKFRYC YWKSSQSFVI TSGWKSFVRE KKLKDKDVIS  240
FYTWHVKTLE GQIKHFLMID VHYSSDNGSV VPEEANMTVH EEGMKTEKFV SSKLKDEETK  300
TEENTGSFML FGVRIQCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2514824113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g088420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481093.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-153RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLR0GSI31e-160R0GSI3_9BRAS; Uncharacterized protein
STRINGXP_010481093.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-147RAV family protein