PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g088380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 425aa MW: 46927.1 Da PI: 10.5721 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 1e-19 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ + r++lg+f++aeeAa+a++ a+++l+g Csa17g088380.1 30 RFRGVRKRP-WGRFAAEIRDpWK----KSRVWLGTFDSAEEAARAYDSAARNLRG 79 69*******.**********883....5*************************99 PP | |||||||
2 | AP2 | 62.4 | 1e-19 | 224 | 273 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ + r++lg+f++aeeAa+a++ a+++l+g Csa17g088380.1 224 RFRGVRKRP-WGRFAAEIRDpWK----KSRVWLGTFDSAEEAARAYDSAARNLRG 273 69*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.31E-29 | 29 | 89 | No hit | No description |
PROSITE profile | PS51032 | 23.341 | 30 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-37 | 30 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-31 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 30 | 88 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.4E-13 | 30 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-10 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-10 | 53 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.31E-29 | 223 | 283 | No hit | No description |
SMART | SM00380 | 8.4E-37 | 224 | 287 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-31 | 224 | 281 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 224 | 282 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.341 | 224 | 281 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.4E-13 | 224 | 273 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MRRGRGSSAV AGPTAVSTVI NGSVKETQQR FRGVRKRPWG RFAAEIRDPW KKSRVWLGTF 60 DSAEEAARAY DSAARNLRGP KAKTNFPIDP SSPSPNLRFT AFPNTVNQNQ NQVDPFMDHR 120 LYPGDNNNNN QQFHPVVNRP TTSSMSSTVE SFSGPRPTAA KPVTTAAKRY PRTPPVILSP 180 STITTSGFFL KSTTMRRGRG SSAVAGPTAV STVINGSVKE TQQRFRGVRK RPWGRFAAEI 240 RDPWKKSRVW LGTFDSAEEA ARAYDSAARN LRGPKAKTNF PIDPSSPSPN LRFTAFPNTV 300 NQNQNQVDPF MDHRLYPGDN NNNNQQFHPV VNRPTTSSMS STVESFSGPR PTAAKPVTTA 360 AKRYPRTPPV VPEDCHSDCD SSSSVIDDDD IASREIERQR NEEDGDGTRA CAVFYFCDDD 420 DILL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-19 | 30 | 281 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g088380.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010479528.1 | 1e-123 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | O80339 | 7e-73 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | R0I4B4 | 8e-77 | R0I4B4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010479528.1 | 1e-123 | (Camelina sativa) | ||||
STRING | XP_010479529.1 | 1e-123 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 1e-46 | ethylene responsive element binding factor 3 |
Publications ? help Back to Top | |||
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