PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g080770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 338aa    MW: 39501 Da    PI: 5.9441
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g080770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.53.2e-091753237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.H 37
                    ++r+C+++ +k++ ++C +++ +lC+ C ++ H+  H
  Csa17g080770.1 17 QPRTCDLCLNKHAVWYCASDDAFLCHVCDESVHSAnH 53
                    789******************************6574 PP
2CCT675.1e-23289332144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++ RY++K+k+R+FeKkirYe+RK++A++RpR+KGrFv+++
  Csa17g080770.1 289 REARVWRYRDKKKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 332
                     9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1111663IPR000315B-box-type zinc finger
SMARTSM003366.1E-121663IPR000315B-box-type zinc finger
PfamPF006437.7E-81759IPR000315B-box-type zinc finger
CDDcd000211.24E-101963No hitNo description
PROSITE profilePS5101715.795289331IPR010402CCT domain
PfamPF062031.5E-17289331IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MFYADIMIPK YQEDVKQPRT CDLCLNKHAV WYCASDDAFL CHVCDESVHS ANHVATKHER  60
VWLRTNEIQN NVLQGTTSHP VWHSGFRRKA RTPRSRCEKK TQQKIDDERR REDPRVPEIG  120
GEAMFFIPEA NDDEDDMTSL VPEFEGFTEM GFFLSNHNGT EESTKQFNFE DEIDAMESLY  180
NNKEEEKEET AKTNGVEACP GQSLMSCKKD YDNVIAISAK TEETEDYEDN ARQGNMLLRL  240
NYENVIAAWD KQESPREAAR NQTELFNTSN FQLVPPGIEE KRVTSRSERE ARVWRYRDKK  300
KNRLFEKKIR YEVRKVNADK RPRMKGRFVR RSLATES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g080770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479338.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 8-like isoform X1
SwissprotQ9M9B30.0COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLR0I7D90.0R0I7D9_9BRAS; Uncharacterized protein
STRINGXP_010479338.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150481517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.20.0B-box type zinc finger protein with CCT domain