PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g073130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 315aa    MW: 32286.1 Da    PI: 5.1129
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g073130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.54.7e-362783460
          zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                    + l+cprC+s+ tkfCyynny+l+qPryfCk+CrryWt+GG+lr+vPvGgg+r++ +
  Csa17g073130.1 27 EPLPCPRCNSNTTKFCYYNNYNLAQPRYFCKSCRRYWTQGGTLRDVPVGGGTRRSSS 83
                    6789*************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.0E-312883IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.4442983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-203378IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MPSEPNQTRP NRVHASTAAY PPPNLAEPLP CPRCNSNTTK FCYYNNYNLA QPRYFCKSCR  60
RYWTQGGTLR DVPVGGGTRR SSSKRHRSFS STATSSSSSS SVITTTTQEP ATTEASQTKG  120
SSSSSNVISG HGGFASLLGL GSGSGGSDYE FGYGSGYGLE EMSLGYLGGS TGGGGEIPVV  180
DVGSDTWRLG EVEGKSGGGD SLIWPGLEIS MQSNHTKGSS SSNVISGHGG FASLLGLGSG  240
SGGSDYEFGY GYGYGLEEMS IGYLGGSTGG GGEIPVVDGG GDTWRLGEVE GKSGGGDSLI  300
WPGLEISMQS NDVK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g073130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500290.11e-103PREDICTED: dof zinc finger protein DOF1.6-like
SwissprotQ9SX973e-87DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBLA0A178W8431e-77A0A178W843_ARATH; Uncharacterized protein
STRINGXP_010500290.11e-103(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.11e-35Dof family protein