PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g071540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HSF | ||||||||
Protein Properties | Length: 358aa MW: 40586.5 Da PI: 8.6292 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.2 | 8.5e-36 | 35 | 127 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fk+g+k+ll++ Csa17g071540.1 35 FLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCE 120 9*****************************************************************99.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k++ Csa17g071540.1 121 IHRRKTS 127 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.4E-38 | 27 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.1E-61 | 31 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.25E-35 | 32 | 124 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.5E-32 | 35 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 35 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 74 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 86 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAMMVENSYG GYGGGGGERI QLMVEGQGKA VPAPFLTKTY QLVDDPATDH VVSWGDDDTT 60 FVVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE 120 IHRRKTSQMI PQQHSPFMTH HHHGPPQIPF SGGSFFPLPP PQRVTTPEDD HYWCDSPPSR 180 PRVIIPQQTN NTIHDTAAQV TALSEDNERL RRSNTVLMSE LAHMKKLYND IIYFVQNHVK 240 PVAPSNSYLS SFLQKQQQPP TLDYYNTTAT VNATTTNLHH GLNSSPPTSQ SSITVLEDDT 300 NHHQDQSNNM RKTKLFGVSL PSSKKRSHHF SDQSSKTRLV LDKSDLALNL MTAASTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-22 | 31 | 127 | 17 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 323 | 327 | KKRSH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00187 | DAP | Transfer from AT1G46264 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g071540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493499 | 0.0 | AB493499.1 Arabidopsis thaliana At1g46264 mRNA for hypothetical protein, partial cds, clone: RAAt1g46264. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010479105.1 | 0.0 | PREDICTED: heat stress transcription factor B-4-like | ||||
Swissprot | Q9C635 | 0.0 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | D7KPW3 | 0.0 | D7KPW3_ARALL; Uncharacterized protein | ||||
STRING | XP_010479105.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2900 | 28 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 0.0 | heat shock transcription factor B4 |