PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g069360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 149aa MW: 17159 Da PI: 5.2465 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.5e-20 | 16 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp + +++lg+f+tae+Aa+a++aa+++++g Csa17g069360.1 16 RFRGVRQRP-WGKWAAEIRDP-----HkaMHVWLGTFDTAEDAARAYDAAALRFRG 65 79*******.**********7.....3369***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.34E-21 | 15 | 75 | No hit | No description |
PROSITE profile | PS51032 | 24.5 | 16 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-23 | 16 | 75 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-13 | 16 | 65 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-33 | 16 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-37 | 16 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MTEECESSTS MEKPKRFRGV RQRPWGKWAA EIRDPHKAMH VWLGTFDTAE DAARAYDAAA 60 LRFRGSKAKL NFPENVGTQT IQPDSHFLEN SMQPPLTYLE QCPSLSSSYG YTEQQPPLIG 120 MLQPREEENH FFTQPWTEYD QYNYPSYG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-24 | 13 | 78 | 2 | 68 | ATERF1 |
3gcc_A | 1e-24 | 13 | 78 | 2 | 68 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Binds to the GCC-box pathogenesis-related promoter element and the cis-element CE1 (coupling element 1). Involved in the regulation of gene expression in response to abiotic stresses, possibly through the abscisic acid (ABA) signaling pathway (PubMed:20193749). Involved in resistance to the beet cyst nematode Heterodera schachtii in roots. May promote callose deposition at syncytia which may interfere with nutrient import into syncytia and inhibit the development of nematodes (PubMed:23510309). {ECO:0000269|PubMed:20193749, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:23510309}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g069360.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, heat and drought stresses (PubMed:21069430). Induced by osmotic stress (PubMed:20193749). Induced by jasmonate (JA) (PubMed:21069430, PubMed:14756769, PubMed:17786451). Induced by salicylic acid (SA) (PubMed:14756769, PubMed:21069430). Induced by abscisic acid (ABA) (PubMed:20193749, PubMed:21069430). Induced by ethylene (PubMed:14756769). Induced by infection with the bacterial pathogen Pseudomonas syringae pv. tomato DC3000 (PubMed:14756769, PubMed:23510309). Induced by the bacterial pathogen Pseudomonas syringae pv. maculicola ES4326 (PubMed:14756769). Induced by wounding (PubMed:17786451). Down-regulated by infection with the beet cyst nematode Heterodera schachtii (PubMed:23510309). {ECO:0000269|PubMed:14756769, ECO:0000269|PubMed:17786451, ECO:0000269|PubMed:20193749, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:23510309}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010479000.1 | 1e-108 | PREDICTED: ethylene-responsive transcription factor RAP2-6-like isoform X3 | ||||
Swissprot | Q7G1L2 | 2e-77 | RAP26_ARATH; Ethylene-responsive transcription factor RAP2-6 | ||||
TrEMBL | A0A178W859 | 4e-75 | A0A178W859_ARATH; RAP2.6 | ||||
STRING | XP_010478998.1 | 1e-107 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 2e-70 | related to AP2 6 |