PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa17g064710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 30118.7 Da PI: 10.0455 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.3e-18 | 81 | 128 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+d+++ +G g+W++ ++ g+ R++k+c++rw +yl Csa17g064710.1 81 KGAWTKEEDQLLIDYIRNHGEGSWRSLPKSAGLLRCGKSCRLRWINYL 128 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 134 | 178 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T Ed+++v+++ ++G++ W++Ia +++ gRt++++k++w+++ Csa17g064710.1 134 RGNFTDSEDQIIVKLHSLFGNK-WSLIAGKLQ-GRTDNEIKNYWNTH 178 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 72 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.025 | 76 | 128 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-28 | 80 | 175 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 80 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 81 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.38E-10 | 83 | 128 | No hit | No description |
PROSITE profile | PS51294 | 26.883 | 129 | 183 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 132 | 183 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 133 | 181 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 134 | 178 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.59E-10 | 136 | 179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
LSSLLLQNKE TKSKERKKKK VTYQIFSTHK AKHQLGQSHF LLYNTSLQIL LSLLSHYYTH 60 IVKIIIIMGR SPCCEKAHSN KGAWTKEEDQ LLIDYIRNHG EGSWRSLPKS AGLLRCGKSC 120 RLRWINYLRP DLKRGNFTDS EDQIIVKLHS LFGNKWSLIA GKLQGRTDNE IKNYWNTHIK 180 RKLLSRGIDP NTHRSMIQPT DEDLLLRVDR DYRFDSVDSE LNLDLTLGSS PNRWAARDVC 240 VCNLGSREPC INCQTAKWVL * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 80 | 183 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. {ECO:0000250|UniProtKB:Q38850}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa17g064710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF207991 | 1e-134 | AF207991.1 Arabidopsis thaliana putative transcription factor (MYB8) mRNA, complete cds. | |||
GenBank | AY519561 | 1e-134 | AY519561.1 Arabidopsis thaliana MYB transcription factor (At1g35515) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478947.1 | 1e-143 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q9SDS8 | 1e-98 | MYB8_ARATH; Transcription factor MYB8 | ||||
TrEMBL | R0GLS9 | 3e-94 | R0GLS9_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010478947.1 | 1e-142 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G35515.1 | 1e-101 | high response to osmotic stress 10 |
Publications ? help Back to Top | |||
---|---|---|---|
|