PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g064640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 163aa MW: 18660.4 Da PI: 7.2513 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.1 | 2.7e-14 | 2 | 50 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien+ r vtf kR++ i K +ELS C+a+v +++s++g y++ Csa17g064640.1 2 KRIENYADRMVTFYKRKQKIYTKLSELSLICGADVGFLVYSNSGIPYTF 50 79******************************************99999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-10 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.628 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-17 | 1 | 71 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.0E-17 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MKRIENYADR MVTFYKRKQK IYTKLSELSL ICGADVGFLV YSNSGIPYTF GSPSFEVVAK 60 RFLNSEGSSS TSLLQQSNIN VQHKEKMEKL FKVYNSLLEK ADAEKQKGIA MAKAEAEALP 120 VEKDAWWRVD PTTVKNKEVL KQLLEKYEDL YEKLCDEEQE VL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g064640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010480919.1 | 1e-105 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | D7LMQ2 | 9e-60 | D7LMQ2_ARALL; Uncharacterized protein | ||||
STRING | XP_010480919.1 | 1e-104 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4676 | 13 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 2e-45 | AGAMOUS-like 64 |