PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g064630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19194.9 Da    PI: 4.9466
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g064630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.29e-13246145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    k+ien+    vtf +R++ i  K +ELS+LC+a+v  +++s++g 
  Csa17g064630.1  2 KKIENYADGMVTFYRRKQNIYTKLSELSILCGADVGFLVYSNSGI 46
                    68****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.03154IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-15166IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-7153IPR002100Transcription factor, MADS-box
PfamPF003198.8E-15349IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKKIENYADG MVTFYRRKQN IYTKLSELSI LCGADVGFLV YSNSGIPYTL GSPSFEVVAK  60
RFLNSEGSSS TSLPQQSNID IQHKEKMEEL CKVYNRLLEK ADAEKQKGMA MAKAEAEALP  120
VEKDVWWRVD PTTVKDKEVL KQLLEQYEDL YEKLCDEVVA RNQIENAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g064630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480918.11e-114PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLD7LMQ27e-60D7LMQ2_ARALL; Uncharacterized protein
STRINGXP_010480918.11e-114(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.14e-52AGAMOUS-like 64