PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g063620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 263aa    MW: 28948 Da    PI: 4.5968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g063620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13196241655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Csa17g063620.1 196 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKTLQ 241
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.678190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16193251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-12194245No hitNo description
Gene3DG3DSA:4.10.280.107.0E-16195253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10196241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MQSTNVGDGS GEDGGGGGEM SRSGLSRIRS APATWIETLL EEEEEDEGDG LKPNLCLTEL  60
LTGNNNNSGV ITSRDSFEFP SSVEQGLYST THQGGGFHRQ NSSPADFLSG SCAGTDGFFS  120
NFGIPASYDY LSPNVDISPT KRSRDMEEAH FSSQMKEEQM SGGISGMMDM NMDKLLEDSV  180
PCRVRAKRGC ATHPRSIAER VRRTRISDRI RRLQELVPNM DKQTNTADML EEAVEYVKTL  240
QSQIQELTEQ QKRCICKPKE EQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g063620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117910.0AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAY0937940.0AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478939.10.0PREDICTED: transcription factor bHLH80
SwissprotQ9C8P81e-147BH080_ARATH; Transcription factor bHLH80
TrEMBLR0IDA11e-154R0IDA1_9BRAS; Uncharacterized protein
STRINGXP_010478939.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-132bHLH family protein