PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g061100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 250aa MW: 27543.2 Da PI: 6.609 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.4 | 3.8e-13 | 10 | 51 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ tf kR++gi KK +E +LC+++++ +i s+ Csa17g061100.1 10 IANNYLRKQTFKKRKAGIVKKLHEFTTLCGVKACAVICSPYE 51 889999********************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-11 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.932 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.67E-23 | 1 | 75 | No hit | No description |
PRINTS | PR00404 | 6.7E-6 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-18 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-13 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-6 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MKGRLKLSLI ANNYLRKQTF KKRKAGIVKK LHEFTTLCGV KACAVICSPY ENPVVWPSAE 60 GVQEVVSKVM ELPVTGHPVT ADASMVTAPN GFYGYFPDNG MTMNPNPSQH ESLVKHHVPF 120 GSVQHHVPVD SVQHHVPFGS VQHHVPFGPV QHGIYDMNLH QDMSLDPNQY LDQQGSFMNM 180 LLGHPQQMGY DGENAQIPLM NDNYHQLPTM DFATTGHMPS INANTNTNTI AGVYAPNDIN 240 GLISEDVDF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 23 | LRKQTFKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g061100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478905.1 | 1e-128 | PREDICTED: agamous-like MADS-box protein AGL86 | ||||
Refseq | XP_010478906.1 | 1e-128 | PREDICTED: agamous-like MADS-box protein AGL86 | ||||
Swissprot | Q9C6V3 | 5e-31 | AGL86_ARATH; Agamous-like MADS-box protein AGL86 | ||||
TrEMBL | S6B3X7 | 2e-30 | S6B3X7_ARAHH; Agamous-like MADS-box protein AGL86 (Fragment) | ||||
TrEMBL | S6BCE0 | 2e-30 | S6BCE0_ARAHG; Agamous-like MADS-box protein AGL86 (Fragment) | ||||
STRING | XP_010478905.1 | 1e-127 | (Camelina sativa) | ||||
STRING | XP_010478906.1 | 1e-127 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31630.1 | 2e-33 | AGAMOUS-like 86 |
Publications ? help Back to Top | |||
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