PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g061100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 250aa    MW: 27543.2 Da    PI: 6.609
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g061100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.43.8e-131051344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i n+  r+ tf kR++gi KK +E  +LC+++++ +i s+  
  Csa17g061100.1 10 IANNYLRKQTFKKRKAGIVKKLHEFTTLCGVKACAVICSPYE 51
                    889999********************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-11158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.932148IPR002100Transcription factor, MADS-box
CDDcd002669.67E-23175No hitNo description
PRINTSPR004046.7E-6222IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-18277IPR002100Transcription factor, MADS-box
PfamPF003191.8E-131056IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-62237IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKGRLKLSLI ANNYLRKQTF KKRKAGIVKK LHEFTTLCGV KACAVICSPY ENPVVWPSAE  60
GVQEVVSKVM ELPVTGHPVT ADASMVTAPN GFYGYFPDNG MTMNPNPSQH ESLVKHHVPF  120
GSVQHHVPVD SVQHHVPFGS VQHHVPFGPV QHGIYDMNLH QDMSLDPNQY LDQQGSFMNM  180
LLGHPQQMGY DGENAQIPLM NDNYHQLPTM DFATTGHMPS INANTNTNTI AGVYAPNDIN  240
GLISEDVDF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11423LRKQTFKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g061100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478905.11e-128PREDICTED: agamous-like MADS-box protein AGL86
RefseqXP_010478906.11e-128PREDICTED: agamous-like MADS-box protein AGL86
SwissprotQ9C6V35e-31AGL86_ARATH; Agamous-like MADS-box protein AGL86
TrEMBLS6B3X72e-30S6B3X7_ARAHH; Agamous-like MADS-box protein AGL86 (Fragment)
TrEMBLS6BCE02e-30S6BCE0_ARAHG; Agamous-like MADS-box protein AGL86 (Fragment)
STRINGXP_010478905.11e-127(Camelina sativa)
STRINGXP_010478906.11e-127(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.12e-33AGAMOUS-like 86
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]