PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g059710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 613aa MW: 69178.5 Da PI: 7.4163 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.3 | 1.4e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+l+ sd++++g l++pk+ a+e+ +++ +++ +d++g++W++k+++r++++r+++t+GW+ Fv ++L +gD++vF + ++ Csa17g059710.1 126 FKKILSASDTSTHGGLSVPKRDATEClppldmSLP-VPTQEFLTKDLHGNEWRFKHSFRGTPRRHLITTGWSAFVTTKKLVAGDVLVFV--RGEN 217 89****************************97444.44458999*********************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+++r+ Csa17g059710.1 218 GELRVGIRRA 227 99*****996 PP | |||||||
2 | Auxin_resp | 97.5 | 1.9e-32 | 252 | 331 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+++k++F++vY+Pr+ s+F+v+ +++++a+++k+ vG+Rf m+fe+ed+serr+ Gt++gv++++p +W++S+WrsL+ Csa17g059710.1 252 AVHAFHSKCMFSIVYKPRS--SQFIVNHDNFLDAMNKKFNVGSRFTMQFEGEDFSERRYFGTIIGVNNFSP-HWKDSEWRSLQ 331 799***************6..9*************************************************.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-37 | 115 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.41E-32 | 120 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.59E-23 | 125 | 226 | No hit | No description |
SMART | SM01019 | 1.3E-23 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.324 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.6E-28 | 252 | 331 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.9E-5 | 514 | 553 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.756 | 517 | 598 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 7.36E-12 | 519 | 593 | No hit | No description |
Pfam | PF02309 | 6.1E-6 | 560 | 604 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MESGNVVNAQ PELSGIVDET KSYLYEQLWN LCAGPLCDLP KLGDKVYYFP QGHIEFVEAS 60 TREELNQIQP NFDIPSKLQC HVMAIHRKVE KNTDQVYAEI TLMPNTTQVI IPTQNESNDR 120 PKINFFKKIL SASDTSTHGG LSVPKRDATE CLPPLDMSLP VPTQEFLTKD LHGNEWRFKH 180 SFRGTPRRHL ITTGWSAFVT TKKLVAGDVL VFVRGENGEL RVGIRRAGHQ QGNTPSSLVS 240 TESMRHGVIV SAVHAFHSKC MFSIVYKPRS SQFIVNHDNF LDAMNKKFNV GSRFTMQFEG 300 EDFSERRYFG TIIGVNNFSP HWKDSEWRSL QVRWDEFVSF PRPNRVSPWE IKHLTPSSNV 360 IQSSLLKNKR SRHVNEIGSS SSHCLPPILI EGQDIGQPSM TSPMSIPQLS NRDAVEDAKK 420 PSNGIMSYSV PSMPDRYYNN DQMITPIKEN ITINAGCSCR LFGVTLTTPS EIKYPVEPNE 480 SYQISDTSKL SQEKKLGLTQ TSTSPTEIRS KQFSSIRSCT KVQMQGVTIG RALDLSVLNG 540 YDQLIHELDK LFDLKGKLQT RNQWEIVFTD DEGDMMVVGD DPWPEFCNMV KKIFILSKEE 600 VNNLKSGTNI SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-124 | 1 | 354 | 1 | 355 | Auxin response factor 1 |
4ldw_A | 1e-124 | 1 | 354 | 1 | 355 | Auxin response factor 1 |
4ldw_B | 1e-124 | 1 | 354 | 1 | 355 | Auxin response factor 1 |
4ldx_A | 1e-124 | 1 | 354 | 1 | 355 | Auxin response factor 1 |
4ldx_B | 1e-124 | 1 | 354 | 1 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g059710.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478873.1 | 0.0 | PREDICTED: putative auxin response factor 14 isoform X1 | ||||
Swissprot | Q9LQE8 | 0.0 | ARFN_ARATH; Putative auxin response factor 14 | ||||
TrEMBL | D7L9F7 | 0.0 | D7L9F7_ARALL; Auxin response factor | ||||
STRING | XP_010478873.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12276 | 7 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35540.1 | 0.0 | auxin response factor 14 |