PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g059690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 517aa MW: 57044.7 Da PI: 5.8085 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21 | 8.6e-07 | 262 | 283 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Csa17g059690.1 262 FCTICGKGFKRDANLRMHMRGH 283 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.17E-5 | 259 | 287 | No hit | No description |
PROSITE profile | PS50157 | 12.03 | 261 | 288 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 261 | 283 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.7E-6 | 262 | 314 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 263 | 283 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 67 | 312 | 345 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 45 | 350 | 372 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
METEDDLCNQ TNWGSSSSKL REPCSSDQAF SGFTTQQKWE DVSILDYEMG GVEPAALQVF 60 DDMKASGQAN VDFLQGVRAQ AWDPRTMLSN LSFMEEKIHQ LQDLVHLLVG RGGGQQLQQG 120 GRQDELAQQQ LITTDLTSII IQLISTAGSL LPSVKHNMST PPGPYTGQPG SAMFPYAREA 180 NNVASQSLNN NNNNNNNNNS SGAQEFDLPK PVVLVDERDS HVVEEHEMKD EDDAEEGENL 240 PPGSYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTA AALAKPNKES 300 VPGSEPLLIK RYSCPFLGCK RNKEHKKFQP LKTILCVKNH YKRTHCDKSF TCSRCHTKKF 360 SVIADLKTHE KHCGKNKWLC SCGTTFSRKD KLFGHIALFQ GHTPAIPLEE TKPSAGTSAQ 420 RESSEGGNNN QGMVGFNLGS APNANQETAQ PGMTDGKMSF EESFSPMNFD TCNFGGFHEF 480 PRLMFDDSES SFQMLIANAC GFSPRSVGES VLDTSL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g059690.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB300236 | 0.0 | AB300236.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Ler. | |||
GenBank | AB300238 | 0.0 | AB300238.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Kl-5. | |||
GenBank | AB300239 | 0.0 | AB300239.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Col-4. | |||
GenBank | AB300240 | 0.0 | AB300240.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Tu-0. | |||
GenBank | AB300241 | 0.0 | AB300241.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Lo-1. | |||
GenBank | AB300242 | 0.0 | AB300242.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Kb-0. | |||
GenBank | AB300243 | 0.0 | AB300243.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Pi-0. | |||
GenBank | AB300244 | 0.0 | AB300244.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Fr-3. | |||
GenBank | AB300245 | 0.0 | AB300245.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Go-0. | |||
GenBank | AB300246 | 0.0 | AB300246.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Van-3. | |||
GenBank | AB300247 | 0.0 | AB300247.1 Arabidopsis thaliana STOP1 gene for C2-H2 zinc finger protein, complete cds, ecotype: Li-1. | |||
GenBank | AC023913 | 0.0 | AC023913.7 Arabidopsis thaliana chromosome 1 BAC F7P12 genomic sequence, complete sequence. | |||
GenBank | AK227128 | 0.0 | AK227128.1 Arabidopsis thaliana mRNA for putative zinc finger protein, complete cds, clone: RAFL09-80-D13. | |||
GenBank | AK318691 | 0.0 | AK318691.1 Arabidopsis thaliana AT1G34370 mRNA, complete cds, clone: RAFL05-15-M14. | |||
GenBank | AY123993 | 0.0 | AY123993.1 Arabidopsis thaliana At1g34370/F7P12_7 mRNA sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478870.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1 | ||||
Refseq | XP_010478871.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | D7KK61 | 0.0 | D7KK61_ARALL; Zinc finger family protein | ||||
STRING | XP_010478870.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6977 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |