PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g059510.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 415aa MW: 45198.1 Da PI: 7.7571

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g059510.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.4	2.1e-09	24	52	22	50
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50 KKA ELSvLC+ v i +++++ ++ ++ Csa17g059510.1 24 KKATELSVLCGNSVGFICYGPDNDVHVWP 52 9**************************98 PP
2	SRF-TF	29.9	7.2e-10	261	289	22	50
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50 KKA ELSvLC+ v i +++++ ly y+ Csa17g059510.1 261 KKATELSVLCGNSVGFICYGPDNDLYVYP 289 9*************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	5.23E-9	19	82	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-6	23	51	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-10	247	323	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-7	252	288	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	8.886	261	292	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MAPCGKKPNK SSNYFKQIFP AFKKKATELS VLCGNSVGFI CYGPDNDVHV WPEPQDNPQA 60 LPEIVGKFNA LSDHMRMSHA SDLFDLPYLK GLSNEELLRH LAKLNSNSVG IKQKKMSILT 120 RRGILKKPND HLRVSDNAAT IISNRKVAPS SDDRLGFGES GFVSRGIHET VSSLGSTAAA 180 SKVSDSSPLT LGLSCGDYFP ATDNSRVKPP DLQNQSESGS SSLSFKIAPR DDNPNKPGDD 240 DDDLKRAKKN FFKQIFPTFK KKATELSVLC GNSVGFICYG PDNDLYVYPE PQDNPRGIPE 300 IVGKFSGLND YKRKNNASDL YDFPNLKGLS GDELRNPLIN LESHLLGIKQ KKLSISTREN 360 SMPMGDIGVS ALHPSGFSSG DYLPVDPMEV CTNKEGAWDL CGIDFGFASS LIPS*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MAPCGKKPNK SSNYFKQIFP AFKKKATELS VLCGNSVGFI CYGPDNDVHV WPEPQDNPQA  60
LPEIVGKFNA LSDHMRMSHA SDLFDLPYLK GLSNEELLRH LAKLNSNSVG IKQKKMSILT  120
RRGILKKPND HLRVSDNAAT IISNRKVAPS SDDRLGFGES GFVSRGIHET VSSLGSTAAA  180
SKVSDSSPLT LGLSCGDYFP ATDNSRVKPP DLQNQSESGS SSLSFKIAPR DDNPNKPGDD  240
DDDLKRAKKN FFKQIFPTFK KKATELSVLC GNSVGFICYG PDNDLYVYPE PQDNPRGIPE  300
IVGKFSGLND YKRKNNASDL YDFPNLKGLS GDELRNPLIN LESHLLGIKQ KKLSISTREN  360
SMPMGDIGVS ALHPSGFSSG DYLPVDPMEV CTNKEGAWDL CGIDFGFASS LIPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g059510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019083117.1	1e-170	PREDICTED: uncharacterized protein LOC104700767 isoform X1
Refseq	XP_019083118.1	1e-170	PREDICTED: uncharacterized protein LOC104700767 isoform X1
Refseq	XP_019083119.1	1e-170	PREDICTED: uncharacterized protein LOC104700767 isoform X2
Swissprot	Q9ZUI9	1e-51	AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBL	R0I988	1e-73	R0I988_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010424594.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11232	9	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60040.1	4e-54	AGAMOUS-like 49

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]