PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g059460.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 554aa MW: 61871.9 Da PI: 4.4721

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g059460.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	54.8	3.2e-17	13	71	2	59
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewy 59 +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i vd+ykv+P++Lp +++k+++++w+ Csa17g059460.1 13 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDVYKVDPSELPglSMLKTGDRQWF 71 69*************************.89*************6447888999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	17.85	12	182	IPR003441	NAC domain
SuperFamily	SSF101941	5.36E-28	13	132	IPR003441	NAC domain
Pfam	PF02365	8.1E-9	14	108	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MADSCFKAGK FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDVY KVDPSELPGL 60 SMLKTGDRQW FXXXXXXXXX XXXXXXXXXX XGRAPNGERT DWVMHEYTMD EDELGRCKNA 120 KEYYALYKLY KKSGAGPKNG EQYGAPFQEE EWVDSDSEEG DNVAVPDDPA VVHYDNCRRM 180 DDPVFNYDNC RRMDDTKFCN PVNVRLQDIE NLLNEIPDAP GVTTRQFNGF TGVPQGNSAG 240 EIQSTLLNSS SGEFVDPRNT GVFLPNNQPY NRQSSFQSGL KSENSFEATS GMAPLLDFEK 300 EDFIEMNDLL IPELGASSTE ISTHFLNNGE VSDISEFDQL FHDISMSLDA DPVFQGTSTD 360 MSSLSNFANN TSDQRQQFLY QELDQTLDIQ QNNFMHPSTT LNQFTDNMWF KDGQAVLFDQ 420 QPQSSSGVFT SHSTGVMPES MNPTVSVNAQ NKEGQNGGGT KSQFSSALWE LLESIPSTPA 480 SACEGPLNQT FVRMSSFSRI RFNGTSVTSR KVTVAKKRIS NRGFLLLSIM GALCAIFWVF 540 IATVGVMERP CLS*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MADSCFKAGK FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDVY KVDPSELPGL  60
SMLKTGDRQW FXXXXXXXXX XXXXXXXXXX XGRAPNGERT DWVMHEYTMD EDELGRCKNA  120
KEYYALYKLY KKSGAGPKNG EQYGAPFQEE EWVDSDSEEG DNVAVPDDPA VVHYDNCRRM  180
DDPVFNYDNC RRMDDTKFCN PVNVRLQDIE NLLNEIPDAP GVTTRQFNGF TGVPQGNSAG  240
EIQSTLLNSS SGEFVDPRNT GVFLPNNQPY NRQSSFQSGL KSENSFEATS GMAPLLDFEK  300
EDFIEMNDLL IPELGASSTE ISTHFLNNGE VSDISEFDQL FHDISMSLDA DPVFQGTSTD  360
MSSLSNFANN TSDQRQQFLY QELDQTLDIQ QNNFMHPSTT LNQFTDNMWF KDGQAVLFDQ  420
QPQSSSGVFT SHSTGVMPES MNPTVSVNAQ NKEGQNGGGT KSQFSSALWE LLESIPSTPA  480
SACEGPLNQT FVRMSSFSRI RFNGTSVTSR KVTVAKKRIS NRGFLLLSIM GALCAIFWVF  540
IATVGVMERP CLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250\|UniProtKB:Q949N0, ECO:0000269\|PubMed:23926065}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g059460.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493493	0.0	AB493493.1 Arabidopsis thaliana At1g34180 mRNA for hypothetical protein, partial cds, clone: RAAt1g34180.
GenBank	AY084860	0.0	AY084860.1 Arabidopsis thaliana clone 11977 mRNA, complete sequence.
GenBank	BT030344	0.0	BT030344.1 Arabidopsis thaliana At1g34180 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010461247.1	0.0	PREDICTED: NAC domain-containing protein 16-like
Swissprot	A4FVP6	0.0	NAC16_ARATH; NAC domain-containing protein 16
TrEMBL	R0IRU7	0.0	R0IRU7_9BRAS; Uncharacterized protein
STRING	XP_010461247.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2812	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34180.1	0.0	NAC domain containing protein 16

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053]