PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g059430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 441aa MW: 49873.1 Da PI: 7.355 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70 | 3.1e-22 | 103 | 204 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f kvlt sd++++g l+l kk+a e+ ++++ +++l+++d++ ++W++k+++r++++r+++t+GW Fv +++L +gD +++ +r+++ Csa17g059430.1 103 FTKVLTASDTSTHGVLSLRKKHALEClppldMSQPVPTQELVVKDLHDNQWTFKHTFRGTPRRHLFTTGWTAFVTSKKLVAGDNFIIL--RRENG 195 89****************************9666667779*******************************************99999..5799* PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+v+++r+ Csa17g059430.1 196 ELLVGIRRA 204 *******97 PP | |||||||
2 | Auxin_resp | 98.8 | 7.5e-33 | 229 | 308 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +a+a++t+++F vvY+Pra s+Fvv+++k+++alk+k+ G+Rf+m+fe+ed+se+r+sG+v+g +dl+p +W+nS+WrsL+ Csa17g059430.1 229 VANAFNTNCMFIVVYKPRA--SQFVVRYDKFVDALKNKFNFGSRFRMRFEGEDFSEKRYSGIVIGEKDLSP-HWKNSEWRSLE 308 6899**************8..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-34 | 95 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-28 | 101 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.87E-21 | 102 | 203 | No hit | No description |
SMART | SM01019 | 4.5E-21 | 103 | 205 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.323 | 103 | 205 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-19 | 103 | 204 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.6E-28 | 229 | 307 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MENNEDMNSQ PELLSITRGK EVYYFPHGHI ELVETSTREL LLDEMRPNIN LPSKLPCRVI 60 AIQLKVEKNT DEVYAQISLM PDTTEVVIPI TNDGSRKPMV CSFTKVLTAS DTSTHGVLSL 120 RKKHALECLP PLDMSQPVPT QELVVKDLHD NQWTFKHTFR GTPRRHLFTT GWTAFVTSKK 180 LVAGDNFIIL RRENGELLVG IRRAKYEIDH IPLSLISTQC MLHGVIASVA NAFNTNCMFI 240 VVYKPRASQF VVRYDKFVDA LKNKFNFGSR FRMRFEGEDF SEKRYSGIVI GEKDLSPHWK 300 NSEWRSLEVQ WDEVSPQKPS KVSLWEIEHL VPSSNILNTT LLKKESPCHL EMGSSSSILS 360 TDNQIGRSNM SSPKNVSYHD VVDDSKVSYG SLMSYRVPTM PNPNCATDQI VQPMQENITT 420 DATTSCMLFG VDLLATPSKK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-108 | 13 | 330 | 31 | 355 | Auxin response factor 1 |
4ldw_A | 1e-108 | 13 | 330 | 31 | 355 | Auxin response factor 1 |
4ldw_B | 1e-108 | 13 | 330 | 31 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g059430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019095946.1 | 0.0 | PREDICTED: auxin response factor 13-like | ||||
Swissprot | Q9FX25 | 0.0 | ARFM_ARATH; Auxin response factor 13 | ||||
TrEMBL | D7KJF3 | 0.0 | D7KJF3_ARALL; Auxin response factor | ||||
STRING | XP_010501775.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12276 | 7 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34170.1 | 0.0 | AUXIN RESPONSE FACTOR 13 |