PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa17g057040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 22725.8 Da PI: 8.4338 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 24.4 | 8.3e-08 | 17 | 140 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleev..ikevd..iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90 p + rF P+ e++ e+L + +++++ l+ + + e++ i Pw+ + + + ++ + F++r + y +++r + + g Wk gk + Csa17g057040.1 17 PLCTRFAPNAREVIEEFLLPTLSQTPpLRGTGLieFGELGlfISGQRPWEPTAYPYFHVNHFWLFVRRWS-Y----ESSRdVGSFGKWKVAGKAT 106 7789*******************99973333331244554336667899976544445555556665544.3....3455366689********* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 ++s+ ++ +g + + + ++g +t W heyr Csa17g057040.1 107 GIHSQdGRFIIGYVQKFDLV----KDGLRTGWYQHEYR 140 ****8444458899988888....7899*********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-10 | 13 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.951 | 16 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-7 | 20 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MAAQQNPLPQ GGNISVPLCT RFAPNAREVI EEFLLPTLSQ TPPLRGTGLI EFGELGLFIS 60 GQRPWEPTAY PYFHVNHFWL FVRRWSYESS RDVGSFGKWK VAGKATGIHS QDGRFIIGYV 120 QKFDLVKDGL RTGWYQHEYR RYSNATFEEV VISHLVYDSS KRDLAPDHIY HGGPDQNVVG 180 LQPAAQNVNP KHPVMIPKME * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa17g057040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019094506.1 | 1e-149 | PREDICTED: uncharacterized protein LOC109129918 |