PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g055470.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 661aa MW: 75100.6 Da PI: 6.5585

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g055470.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.2e-52	4	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLp + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgkd++++ Csa17g055470.1 4 LPLGFRFRPTDEELINHYLRLKINGRDSEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIK 97 699**********************999.99***********6448899999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s k+ +g+kktLvfy+grap+g +t+W+mheyr+ Csa17g055470.1 98 S-KKVIIGMKKTLVFYRGRAPRGGRTNWIMHEYRA 131 .9999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-62	3	154	IPR003441	NAC domain
PROSITE profile	PS51005	58.162	4	154	IPR003441	NAC domain
Pfam	PF02365	2.5E-27	5	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MEALPLGFRF RPTDEELINH YLRLKINGRD SEVRVIPEID VCKWEPWDLP GLSVIKTDDQ 60 EWFFFCPRDR KYPSGHRSNR ATDIGYWKAT GKDRTIKSKK VIIGMKKTLV FYRGRAPRGG 120 RTNWIMHEYR ATDKELDGTA PGQNPYVLCR LFHKPNDSCD TANCDEIENV NTTPTTTRCS 180 PDDTSSEMVQ ETAASCVHAL NRSDDTERCL NEKNNDVKPD VSVINNTSIN RPESSRAKDR 240 VLGKTIVEET PLARFNSTHY GPIFTQMDER AYHPAQSSID FASSHMDSMY TGDFGNFDYG 300 LHFQDGAAIQ DASLADVLDD VFHNNNDSST ERKDFVLPNM MHWPGNTRLL PTEYPFRKDA 360 VAFLDGSAEV AGSQQFVPDN VAPRWVSEHL VDSKEVVEIQ SSSGSSRTLT PLHSNVLGQY 420 ASASYASIDP FNYNVNHPEQ SSFEQSSFEQ NSVDRKISPS DISGFKARSR EIQTNEDFVV 480 EQGTAPRRIR LQIEQPLALV NHRKERDADS YEEDEVQSAM SKVVEVNERC FLNRDKTRVR 540 GPDHSLSESA ELRTQGTAQR RIRLQTRLRK PPTTSNNTRR HSNRSEEEAS HRKEKEDVSS 600 SSSSWQKQNK IMKKSLVQYS SMVIIMAVIV VVLVGVWKES RDAQCSFLFH QLDSLKGMFT 660 *

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MEALPLGFRF RPTDEELINH YLRLKINGRD SEVRVIPEID VCKWEPWDLP GLSVIKTDDQ  60
EWFFFCPRDR KYPSGHRSNR ATDIGYWKAT GKDRTIKSKK VIIGMKKTLV FYRGRAPRGG  120
RTNWIMHEYR ATDKELDGTA PGQNPYVLCR LFHKPNDSCD TANCDEIENV NTTPTTTRCS  180
PDDTSSEMVQ ETAASCVHAL NRSDDTERCL NEKNNDVKPD VSVINNTSIN RPESSRAKDR  240
VLGKTIVEET PLARFNSTHY GPIFTQMDER AYHPAQSSID FASSHMDSMY TGDFGNFDYG  300
LHFQDGAAIQ DASLADVLDD VFHNNNDSST ERKDFVLPNM MHWPGNTRLL PTEYPFRKDA  360
VAFLDGSAEV AGSQQFVPDN VAPRWVSEHL VDSKEVVEIQ SSSGSSRTLT PLHSNVLGQY  420
ASASYASIDP FNYNVNHPEQ SSFEQSSFEQ NSVDRKISPS DISGFKARSR EIQTNEDFVV  480
EQGTAPRRIR LQIEQPLALV NHRKERDADS YEEDEVQSAM SKVVEVNERC FLNRDKTRVR  540
GPDHSLSESA ELRTQGTAQR RIRLQTRLRK PPTTSNNTRR HSNRSEEEAS HRKEKEDVSS  600
SSSSWQKQNK IMKKSLVQYS SMVIIMAVIV VVLVGVWKES RDAQCSFLFH QLDSLKGMFT  660
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-45	3	158	19	172	NAC domain-containing protein 19
3swm_B	1e-45	3	158	19	172	NAC domain-containing protein 19
3swm_C	1e-45	3	158	19	172	NAC domain-containing protein 19
3swm_D	1e-45	3	158	19	172	NAC domain-containing protein 19
3swp_A	1e-45	3	158	19	172	NAC domain-containing protein 19
3swp_B	1e-45	3	158	19	172	NAC domain-containing protein 19
3swp_C	1e-45	3	158	19	172	NAC domain-containing protein 19
3swp_D	1e-45	3	158	19	172	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250\|UniProtKB:Q949N0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g055470.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, heat and drought stresses. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019094280.1	0.0	PREDICTED: NAC domain-containing protein 14-like
Swissprot	B5X570	0.0	NAC14_ARATH; NAC domain-containing protein 14
TrEMBL	R0GV87	0.0	R0GV87_9BRAS; Uncharacterized protein
STRING	XP_010478725.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5594	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	0.0	NAC 014