PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g054250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 520aa    MW: 58074 Da    PI: 5.803
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g054250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.89.4e-49101351128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelvv+yLk+k+++kkl++ e+i e+d+yk++P++Lp +  +k+++++w+fFs rd+k+  g+r++rat++gyWkatgkd+ ++
  Csa17g054250.1  10 LAPGFRFHPTDEELVVYYLKRKIRRKKLRV-EAIGETDVYKFDPEELPeRaLYKTRDRQWFFFSLRDRKH--GSRSSRATERGYWKATGKDRVIK 101
                     579***************************.89**************95346677999**********86..89********************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++ vg kktLvf++grap+ge+t+Wvmhey+l
  Csa17g054250.1 102 C-DSRPVGEKKTLVFHRGRAPNGERTNWVMHEYTL 135
                     *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-556160IPR003441NAC domain
PROSITE profilePS5100552.99510160IPR003441NAC domain
PfamPF023651.6E-2612135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDLTAQNGGL APGFRFHPTD EELVVYYLKR KIRRKKLRVE AIGETDVYKF DPEELPERAL  60
YKTRDRQWFF FSLRDRKHGS RSSRATERGY WKATGKDRVI KCDSRPVGEK KTLVFHRGRA  120
PNGERTNWVM HEYTLHEEEL KRCGGGDVKD AYVLYKIYKK SGSGPKNGEQ YGAPFIEEEW  180
VEEGDDVDEP VDVPGNQLIV SADVDTNNLW AKGISQSELD DNDIEELMRQ VSDQPGPTMQ  240
LNGVSGLDSH VNFEEDMYLE IDDLLLPEPE PTSLEAIKKN SGVLNDNDFV DADSYFRDLG  300
ATNLQSGPVS VHFGNGVEQS NTILVTDQTN IYQCQQQTRK KQASNWPLRN SYTRQINNGS  360
SLMQELNNDR LTAVRFIEAP GTGVPSEFIS PLPSGTSITK EDEATKGESS QFASSLWTFL  420
ESVPAKPAYA LENAFVKVNL VRMSSSGGLF RFASKSTGKN NNVVVTASDS AVKRKKSGGN  480
NDKKNKNKGF FCLSIIGALC ALFWVIIGTM GVSGRSLLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-431016620174NAC domain-containing protein 19
3swm_B1e-431016620174NAC domain-containing protein 19
3swm_C1e-431016620174NAC domain-containing protein 19
3swm_D1e-431016620174NAC domain-containing protein 19
3swp_A1e-431016620174NAC domain-containing protein 19
3swp_B1e-431016620174NAC domain-containing protein 19
3swp_C1e-431016620174NAC domain-containing protein 19
3swp_D1e-431016620174NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13037KIRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in oxidative stress tolerance by mediating regulation of mitochondrial retrograde signaling during mitochondrial dysfunction. Interacts directly with the mitochondrial dysfunction DNA consensus motif 5'-CTTGNNNNNCA[AC]G-3', a cis-regulatory elements of several mitochondrial retrograde regulation-induced genes, and triggers increased oxidative stress tolerance. {ECO:0000269|PubMed:24045019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g054250.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat, salt stress, abscisic acid (ABA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478708.10.0PREDICTED: NAC domain-containing protein 13-like
SwissprotF4IED20.0NAC13_ARATH; NAC domain-containing protein 13
TrEMBLR0IN970.0R0IN97_9BRAS; Uncharacterized protein
STRINGXP_010478708.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153171517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32870.10.0NAC domain protein 13
Publications ? help Back to Top
  1. Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y
    Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.
    Plant Cell, 2014. 26(12): p. 4656-79
    [PMID:25549671]
  2. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]