PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g053150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SRS
Protein Properties Length: 328aa    MW: 36586.3 Da    PI: 9.8938
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g053150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70226.81.5e-082887567
          DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa 67
                    + +C +CGn a+  C ++ C+ CC   +  C  hv    v aa   e++q+ +++ss++++s+
  Csa17g053150.1 28 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLK--V-AATPGEKMQAPSTPSSDQKSSE 87
                    568*******************************954..2.3444555555555555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.6E-53098IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MATSSPSLSN NGLSAVVTPP KTLRGLNKPK CIQCGNVARS RCPFQSCKGC CSRAENPCPI  60
HVLKVAATPG EKMQAPSTPS SDQKSSEGTP GTTTRVSSIR QLSSNFAQFN NLNASPRQRK  120
PLTIKDAQAL NEWRFTKLKE YRDRNIEVEN EAFDRYMSNV NLLEEAFSFT SAPDEEVTGS  180
AASEQNSEEK NMSELKLRLR SNSARTENFK KRITETVNAG LFKLKKPEFG GSSDDQDDMK  240
RRRKRKKWEE KGSAFNEIID KLNKARTEED LKSCLEMKSK LRGQVTSAAA SEKNKVFPSV  300
VRKVEMSEEA LQRISENLQS FDKVETL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240246RRRKRKK
2242246RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g053150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934920.0AB493492.1 Arabidopsis thaliana At1g32730 mRNA for hypothetical protein, partial cds, clone: RAAt1g32730.
GenBankAY0847500.0AY084750.1 Arabidopsis thaliana clone 116730 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478696.10.0PREDICTED: uncharacterized protein LOC104757639
TrEMBLA0A178WNL10.0A0A178WNL1_ARATH; Uncharacterized protein
TrEMBLQ9LPJ10.0Q9LPJ1_ARATH; Electron carrier/iron ion-binding protein
STRINGXP_010478696.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73621317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.10.0