PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g050480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 412aa    MW: 43153.4 Da    PI: 6.5158
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g050480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1703.6e-22315377163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN++L+ e+++lk ++++l +e+
  Csa17g050480.1 315 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNGENSSLRAEINKLKSQYEELVAEN 377
                     89********************************************************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.5E-2716123IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.8E-36162288No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-16310373No hitNo description
SMARTSM003384.3E-21315379IPR004827Basic-leucine zipper domain
PfamPF001704.7E-20315377IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.036317380IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-11318374No hitNo description
CDDcd147022.55E-24320370No hitNo description
PROSITE patternPS000360322337IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
AFTGWLEVGE CDQGLMGSSE MEKSGKEKDP KTPPPSSSSS APAAAAAISQ EPSSAVSAGM  60
ATQDWSGFQA YSPMPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP  120
SLPPGSYPYS PYAMPSPNGM TEASGNTGSG IEGDGKPSDG KEKLPIKRSK GSLGSLNMII  180
GKNSEAGKNS GASANGACSK RHVTSHFAES ASDGSSDGSD ANSQNDSGSR HNGKDGETAS  240
ESGGSAHGPP RNGSNLPVSQ TVAIMPVSAT GVPGPPTNLN IGMDYWSGHG NVPAAVAGVV  300
VDGSQSQPWL QVCDERELKR QRRKQSNRES ARRSRLRKQA ECDELAQRAE VLNGENSSLR  360
AEINKLKSQY EELVAENSSL KSKFSSVPSL EGGELNKNEQ EPQRSARQDV A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331337RRSRLRK
2331338RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g050480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0041470.0BT004147.1 Arabidopsis thaliana clone RAFL16-02-K13 (R50047) putative G-Box binding protein (At1g32150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174494.20.0basic region/leucine zipper transcription factor 68
SwissprotQ84LG20.0BZP68_ARATH; bZIP transcription factor 68
TrEMBLD7KHG30.0D7KHG3_ARALL; Uncharacterized protein
STRINGAT1G32150.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.10.0basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]