PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g050120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 325aa    MW: 37186.4 Da    PI: 9.3748
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g050120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.4e-162465949
                    HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE.EE CS
          SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkly.ey 49
                    +++ ++ R +++ KKA+ELS+LCd+ev+vi++  +g+l  ++
  Csa17g050120.1 24 KTTNLASREQTMYKKASELSILCDVEVCVIYYNRDGELVgTW 65
                    678899******************************985356 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-4667IPR002100Transcription factor, MADS-box
CDDcd002661.17E-181793No hitNo description
SuperFamilySSF554559.59E-1520101IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.4842461IPR002100Transcription factor, MADS-box
PfamPF003192.5E-113161IPR002100Transcription factor, MADS-box
PfamPF031411.4E-17249313IPR004159Putative S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MLTKEKTRRL LSVRNTKSFK KQPKTTNLAS REQTMYKKAS ELSILCDVEV CVIYYNRDGE  60
LVGTWPEDQS KVRNMAERYS KLNDSERRKK STNLSQFLNK KTGLKDKMTS LDINDKRFSE  120
KLFEMEASLE SSLPVLQDQL LRVLQNQTKP DQNSSAGFFT PDPSLMSGTE QDLSLSQQHQ  180
GKVSVFLYNH DNGSFYQLPD SVSSFDPSTS SASLGAQGSF LTSNNFDLPI PMVFPPLMRM  240
FLEPYGNNVN RCETKYVLLE MDRILRPSGY VIIRESSYFM DAITTLAKGM RWSCRREESE  300
YAVKSEKILV CQKKLWFSST VSKF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g050120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0790413e-83AC079041.4 Arabidopsis thaliana chromosome 1 BAC F5M6 genomic sequence, complete sequence.
GenBankAF0837593e-83AF083759.1 Arabidopsis thaliana clone sps626 unknown mRNA.
GenBankAK3190053e-83AK319005.1 Arabidopsis thaliana AT1G31850 mRNA, complete cds, clone: RAFL22-49-P09.
GenBankAY1282913e-83AY128291.1 Arabidopsis thaliana At1g31850/68069_m00154 mRNA, complete cds.
GenBankBT0008253e-83BT000825.1 Arabidopsis thaliana unknown protein (At1g31850/68069_m00154) mRNA, complete cds.
GenBankCP0026843e-83CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480813.11e-175PREDICTED: agamous-like MADS-box protein AGL53
SwissprotQ7X9N22e-72AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1192e-94R0H119_9BRAS; Uncharacterized protein
STRINGXP_010480813.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.12e-68AGAMOUS-like 53
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]