PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g048880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 399aa    MW: 43528.9 Da    PI: 9.5001
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g048880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.73e-1819109275
        trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                     Wt +e+++Liea++ ++er  r++                  ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r + s
  Csa17g048880.1  19 WTLNETMVLIEAKKMDDERRMRRSiglpppeqqqdsrssnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVESS 109
                     **************6666666554455555556666666558999****************************************985444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8061192IPR017877Myb-like domain
PfamPF138372.0E-1318107No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPPPEQ QQDSRSSNKP  60
AELRWKWIED YCWRKGCMRS QNQCNDKWDN LMRDYKKVRE YERRRVESSI SAAESSSSSA  120
AAAAASAGDT PSYWKMEKSE RKERNLPSNM LPQTYQALFE VVENKTLPSS TAATAVTAAV  180
AAAAAAIGSG NGSGGGQLQK VLQQQGLGFV VPKVHQIIHQ PPPPPPAVIV SLPPPPSQPP  240
PLQPLPRPLL LPPPPPPSFH AQPILPTKDS SSSDSDTSEY SDTSPAKRRR TMPTTTAGPS  300
GGGEEETTVA AALSRSVTVI ANAIRESEER QDRRHKEVMS VQERRLKIEE SSVEMNREGM  360
NGLVEAINKL ASSIFALASS SSSSSSARHN NQHQGGPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g048880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0076541e-180AC007654.2 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I, complete sequence.
GenBankAK2293841e-180AK229384.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-62-O19.
GenBankCP0026841e-180CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478578.10.0PREDICTED: amyloid beta A4 precursor protein-binding family B member 1-interacting protein-like isoform X1
TrEMBLR0GU310.0R0GU31_9BRAS; Uncharacterized protein
STRINGXP_010478578.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-125Trihelix family protein