PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g048530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 441aa    MW: 49407.3 Da    PI: 6.8634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g048530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000143303631553
                     HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
             HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                     ++++++ +L++++ +      +K + a++L++A+ YI+ 
  Csa17g048530.1 330 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 363
                     7899999999999998.....8***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.994315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-9329381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.32E-4329369No hitNo description
Gene3DG3DSA:4.10.280.106.9E-7330372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLREECTPSS SWWEDVQHHH NDHANSITST SFYHKSSTNI SNTNVSCEED NLSISTVSAS  60
NRLDLTAESS NHHSLSAPAQ PPSSSDELLR DHVASSHNHL WSLAFLPGRS LGDQMMDHHH  120
HNHHLTSSRN SSTTSELQSY EPACDNGNGW VYDTNQVRYD QSSDQRLSKL TDLVGKHWSI  180
APPNNPDMNH NLHHHFDHDH SQTNDDVSMY RQALEVKNEE TLCYNNGSST GGGGSLFHDP  240
IESSRGFLDI RLSRPLSDIN PSFKPCFKAL NLSEFNKKEH QTASLATVRL GTTNAGKKKR  300
CEEISDEVSK KAKCGGGSTL SPEKELPKAK LRDKITTLQQ IVSPFGKTDT ASVLQEAITY  360
INFYQEQVKL LSTPYMKNSA IKDPWGGWDR EDHNKRGPRQ HLDLRSRGLC LVPIACTPIA  420
YRDNSATDYW SPSYRGSLYR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g048530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934880.0AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478548.10.0PREDICTED: transcription factor bHLH111
SwissprotQ9FYJ60.0BH111_ARATH; Transcription factor bHLH111
TrEMBLR0GWX40.0R0GWX4_9BRAS; Uncharacterized protein
STRINGXP_010478548.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.10.0bHLH family protein