PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g046030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 276aa MW: 31720.1 Da PI: 5.6164 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.6 | 9.1e-08 | 157 | 201 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR+ri ++ +eL +l+P + +K + ae+ + A +Y+k Lq Csa17g046030.1 157 SIAARKRRRRITEKTHELGKLIPGS-----QKHNTAEMFQAAAKYVKFLQ 201 6788*******************98.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.709 | 151 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-10 | 152 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-10 | 154 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-9 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-5 | 157 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MDCLSYFSNS DAIQLEDCFI PELDTFFFQA QPQHQLHQPL HLEEALSPSL CEFSHFYEPF 60 LPPQDIFLPS PKTEVFNESQ DLDAFFPTPK HQKLINSSFH FNTNDPFFPS PNPNLLDSFI 120 TETSNFSEFL VPDFSPAFKV GWSDKCDTKK PELSAQSIAA RKRRRRITEK THELGKLIPG 180 SQKHNTAEMF QAAAKYVKFL QAQIEIFQLK QTNVQTWESS KVGREMQFLL ASQGIQEKLS 240 TEEVCVVPRE MVQVLKAEEC ILRNPRISRD LNKLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 164 | RKRRR |
2 | 161 | 166 | KRRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g046030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488587 | 1e-173 | AF488587.1 Arabidopsis thaliana clone bHLH052 putative bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478497.1 | 0.0 | PREDICTED: transcription factor bHLH52-like | ||||
Swissprot | Q9SA82 | 1e-133 | BH052_ARATH; Transcription factor bHLH52 | ||||
TrEMBL | R0INR8 | 1e-161 | R0INR8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010478497.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 1e-125 | bHLH family protein |
Publications ? help Back to Top | |||
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