PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g044830.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 709aa MW: 78628.9 Da PI: 5.1952

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g044830.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	22.4	2.4e-07	504	528	2	26
RWP-RK 2 ekeisledlskyFslpikdAAkeLg 26 ek+is+e+l++yF++++kdAAk+Lg Csa17g044830.1 504 EKTISIEVLQQYFAGSLKDAAKSLG 528 799*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54277	3.92E-21	600	690	No hit	No description
PROSITE profile	PS51745	19.507	608	690	IPR000270	PB1 domain
SMART	SM00666	1.1E-21	608	690	IPR000270	PB1 domain
CDD	cd06407	1.51E-33	610	689	No hit	No description
Pfam	PF00564	7.1E-18	611	689	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.2E-26	611	690	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MELDDLDLSG SWPLDQITFS SNFKSPVIFS SSEQPFSPLW SFSEAAGDVG AGDLYVASSR 60 FTDYSLILAP PSSESDSTTK EIIIDNHAPS PLYGIMPSEN NNPDSYCAIK AKMTQALRYF 120 KDCSGQPFVL APNSNGLHQY RMVSLTYMFS LDGERDGDLG LPGRVFRKKL PEWTPNVQYY 180 SSKEFSRLGH ALHYNVQGTL ALPIFEKVCK GLEAVNLKTS EILNHETTQI CNEGRQNALA 240 EILEILTVVC ETYKLPLAQT WVPCRHRSVL AFGGGFKKSC SSFDGSCMGK FCMSTSDLAV 300 YVVDAHVWGF RDACAEHHLQ KGQGVAGRAF LSGNLCFSRD VTRFCKTDYP LVHYARMFKL 360 TSCFAVCLKS TFTGDDEYVL EFFLPPAITD KSEQDFLLGS LFQTMKQHYS SLKVVSETEL 420 CENEISLEVL EASEDGMVYS KYEPIRIHHP APISKDYLEL NAPEQKLSLN SDLIADGFER 480 FQTLEPLSEA KTVKKSERKR GKTEKTISIE VLQQYFAGSL KDAAKSLGDS VQGADGSLNL 540 TSLSPRPWSH QISPTENQPP KNFPPASTSP PSYLQDVKIE NRDAEDGAGS SKSRASCKAS 600 PTTLHNKLAS IKATYREDII RFKISPESIS IMELKQQVAK RLKLEMAAFE LKYLDDDSEW 660 VSVSCDADLS ECLDTSATKA NTLRLSVHDV TLNFGSSCES SEENMMCL*

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MELDDLDLSG SWPLDQITFS SNFKSPVIFS SSEQPFSPLW SFSEAAGDVG AGDLYVASSR  60
FTDYSLILAP PSSESDSTTK EIIIDNHAPS PLYGIMPSEN NNPDSYCAIK AKMTQALRYF  120
KDCSGQPFVL APNSNGLHQY RMVSLTYMFS LDGERDGDLG LPGRVFRKKL PEWTPNVQYY  180
SSKEFSRLGH ALHYNVQGTL ALPIFEKVCK GLEAVNLKTS EILNHETTQI CNEGRQNALA  240
EILEILTVVC ETYKLPLAQT WVPCRHRSVL AFGGGFKKSC SSFDGSCMGK FCMSTSDLAV  300
YVVDAHVWGF RDACAEHHLQ KGQGVAGRAF LSGNLCFSRD VTRFCKTDYP LVHYARMFKL  360
TSCFAVCLKS TFTGDDEYVL EFFLPPAITD KSEQDFLLGS LFQTMKQHYS SLKVVSETEL  420
CENEISLEVL EASEDGMVYS KYEPIRIHHP APISKDYLEL NAPEQKLSLN SDLIADGFER  480
FQTLEPLSEA KTVKKSERKR GKTEKTISIE VLQQYFAGSL KDAAKSLGDS VQGADGSLNL  540
TSLSPRPWSH QISPTENQPP KNFPPASTSP PSYLQDVKIE NRDAEDGAGS SKSRASCKAS  600
PTTLHNKLAS IKATYREDII RFKISPESIS IMELKQQVAK RLKLEMAAFE LKYLDDDSEW  660
VSVSCDADLS ECLDTSATKA NTLRLSVHDV TLNFGSSCES SEENMMCL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g044830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000933	0.0	BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010473720.1	0.0	PREDICTED: protein NLP6 isoform X1
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	R0GCV5	0.0	R0GCV5_9BRAS; Uncharacterized protein
STRING	XP_010473720.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]