PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g043290.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 921aa MW: 101762 Da PI: 6.3454 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.6 | 5.6e-24 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ Csa17g043290.2 121 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WND 211 99*****************************8544444..48************************************************..788 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ Csa17g043290.2 212 KNQLLLGIRRA 222 8889****997 PP | |||||||
2 | Auxin_resp | 106.5 | 3e-35 | 247 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPr......astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPr as+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp+rW nS+Wrs+k Csa17g043290.2 247 AAHAAATNSRFTIFYNPRnplffrASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVK 336 79***************64444448****************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-48 | 106 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-41 | 114 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-20 | 120 | 221 | No hit | No description |
PROSITE profile | PS50863 | 12.464 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-22 | 121 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-24 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.4E-30 | 247 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.0E-8 | 770 | 870 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.16E-7 | 772 | 856 | No hit | No description |
PROSITE profile | PS51745 | 24.173 | 781 | 865 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 921 aa Download sequence Send to blast |
MGWEVEGNRE KRVLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS TNKEVDAHIP 60 NYPSLHPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLNAQE QKDPYLPAEL GVPSRQPTNY 120 FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYSQQPPAQE LMARDLHDNE WKFRHIFRGQ 180 PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN DKNQLLLGIR RANRPQTVMP SSVLSSDSMH 240 LGLLAAAAHA AATNSRFTIF YNPRNPLFFR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL MWDRGLQSLN FQGMGVNPWM 420 QPRLDTSGFL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSSGFS MQSPSLVQPQ 480 MLQQQLSQQQ QQQLSQQQQQ QLSQQQQQQQ QLSQHQQQQQ QQQAYLGVPE THQPQSQAQS 540 QSNNLLSQQQ QVVDNHNPSA SSPAVVSTMS QFGSASQSNT SPLQSMASLC HQQSFSDTNG 600 GNNPISPLHS LLSNFSQDES SQLLNLTRTN SAMTSSGWPS KRPAVDSSFQ HSGAGNNTQS 660 VMEQLGQSHT SNVPPNAVSL PPFPGGRECS IEQEGSASDP HSHLLFGVNI DSSSLLMPNG 720 MSNLRSIGIE GGDSTTLPFT SSNFNNDFSG NLAMTTPSSC IDESGFLQSS ENIGSENPQS 780 NTFVKVYKSG SFGRSLDISK FSSYHELRSE LARMFGLEGQ LEDPVRSGWQ LVFVDRENDV 840 LLLGDDPWPE FVSSVWCIKI LSPQEVQQMG KRGLELLNSA PSSNNVDKLP SNGNCDDFGN 900 RSDPRNLGNG IASVGGTFNY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-157 | 7 | 357 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g043290.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY669788 | 0.0 | AY669788.1 Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478418.1 | 0.0 | PREDICTED: auxin response factor 6 isoform X2 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | R0GUI5 | 0.0 | R0GUI5_9BRAS; Auxin response factor | ||||
STRING | XP_010478417.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |