PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g043290.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARF
Protein Properties Length: 921aa    MW: 101762 Da    PI: 6.3454
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g043290.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.6e-24121222199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  Csa17g043290.2 121 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WND 211
                     99*****************************8544444..48************************************************..788 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  Csa17g043290.2 212 KNQLLLGIRRA 222
                     8889****997 PP

2Auxin_resp106.53e-35247336183
      Auxin_resp   1 aahaastksvFevvYnPr......astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPr      as+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp+rW nS+Wrs+k
  Csa17g043290.2 247 AAHAAATNSRFTIFYNPRnplffrASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVK 336
                     79***************64444448****************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-48106250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-41114236IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-20120221No hitNo description
PROSITE profilePS5086312.464121223IPR003340B3 DNA binding domain
PfamPF023625.0E-22121222IPR003340B3 DNA binding domain
SMARTSM010191.9E-24121223IPR003340B3 DNA binding domain
PfamPF065073.4E-30247336IPR010525Auxin response factor
PfamPF023095.0E-8770870IPR033389AUX/IAA domain
SuperFamilySSF542772.16E-7772856No hitNo description
PROSITE profilePS5174524.173781865IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MGWEVEGNRE KRVLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS TNKEVDAHIP  60
NYPSLHPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLNAQE QKDPYLPAEL GVPSRQPTNY  120
FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYSQQPPAQE LMARDLHDNE WKFRHIFRGQ  180
PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN DKNQLLLGIR RANRPQTVMP SSVLSSDSMH  240
LGLLAAAAHA AATNSRFTIF YNPRNPLFFR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL MWDRGLQSLN FQGMGVNPWM  420
QPRLDTSGFL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSSGFS MQSPSLVQPQ  480
MLQQQLSQQQ QQQLSQQQQQ QLSQQQQQQQ QLSQHQQQQQ QQQAYLGVPE THQPQSQAQS  540
QSNNLLSQQQ QVVDNHNPSA SSPAVVSTMS QFGSASQSNT SPLQSMASLC HQQSFSDTNG  600
GNNPISPLHS LLSNFSQDES SQLLNLTRTN SAMTSSGWPS KRPAVDSSFQ HSGAGNNTQS  660
VMEQLGQSHT SNVPPNAVSL PPFPGGRECS IEQEGSASDP HSHLLFGVNI DSSSLLMPNG  720
MSNLRSIGIE GGDSTTLPFT SSNFNNDFSG NLAMTTPSSC IDESGFLQSS ENIGSENPQS  780
NTFVKVYKSG SFGRSLDISK FSSYHELRSE LARMFGLEGQ LEDPVRSGWQ LVFVDRENDV  840
LLLGDDPWPE FVSSVWCIKI LSPQEVQQMG KRGLELLNSA PSSNNVDKLP SNGNCDDFGN  900
RSDPRNLGNG IASVGGTFNY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-157735745388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g043290.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6697880.0AY669788.1 Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478418.10.0PREDICTED: auxin response factor 6 isoform X2
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLR0GUI50.0R0GUI5_9BRAS; Auxin response factor
STRINGXP_010478417.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Oh E, et al.
    Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
    Elife, 2015.
    [PMID:24867218]
  3. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  4. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  5. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  6. Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
    Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
    Genet. Mol. Res., 2015. 14(3): p. 7386-94
    [PMID:26214417]
  7. Li P, et al.
    Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
    Plant Cell Environ., 2016. 39(2): p. 377-92
    [PMID:26296956]
  8. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  9. Luo S, et al.
    Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1156
    [PMID:26734051]
  10. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  11. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  12. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]