PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa17g043170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 457aa MW: 51152.8 Da PI: 8.7759 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.4 | 3.7e-32 | 47 | 132 | 2 | 79 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesss 79 g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a +i +l+ +++++s+c++++s+ Csa17g043170.1 47 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPIntnfdlenQNQTKSACSSGTSE 132 689***********************************************************996666665544444455222222 PP | |||||||
2 | TCP | 113.2 | 3.5e-35 | 169 | 285 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a +i +l+ +++ +++++ ++ + Csa17g043170.1 169 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPINTNFD--L-----ENQNQ--------TK--S 246 689************************************************************944444..2.....22222........22..3 PP TCP 97 skksqksaasalnlak.esrakarararertrekmrikn 134 +s +s++s l+l++ e r kar+rarert+++ ++ Csa17g043170.1 247 ACSSGTSESSLLSLSRtEIRGKARERARERTAKDRDKDL 285 344556666679999999*************99987765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-33 | 48 | 142 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.788 | 49 | 107 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.4E-33 | 170 | 292 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.788 | 171 | 229 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.836 | 263 | 281 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 457 aa Download sequence Send to blast |
MELDEHVEVQ RQQQQSRKLQ RFTDDNTGMM KDWNNPSSRI IRVSRASGGK DRHSKVLTSK 60 GLRDRRIRLS VATAIQFYDL QDRLGFDQPS KAVEWLINAA SDSITDLPPI NTNFDLENQN 120 QTKSACSSGT SESSLLSLSX LQRFTDDNTG MMKDWNNPSS RIIRVSRASG GKDRHSKVLT 180 SKGLRDRRIR LSVATAIQFY DLQDRLGFDQ PSKAVEWLIN AASDSITDLP PINTNFDLEN 240 QNQTKSACSS GTSESSLLSL SRTEIRGKAR ERARERTAKD RDKDLQNAHQ SSFTQLLTGG 300 FDQQQQQQQP DNHRNWTGGS DCFNPVQFIP NSSSTSHQEP PTMNQNNHPF SFVPDQYNFG 360 ISSSSALNGG YSSRGTLQSN SQSLFLNNNI TQRASISSSS SSSSSPMDSQ SISFFMATPP 420 PLDHHSHQLP STFDGRLYLY YGEGNRNSDD KDKDRR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 54 | 230 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 54 | 230 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa17g043170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC073506 | 1e-154 | AC073506.11 Arabidopsis thaliana chromosome 1 BAC F12P21 genomic sequence, complete sequence. | |||
GenBank | AY035008 | 1e-154 | AY035008.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds. | |||
GenBank | AY057672 | 1e-154 | AY057672.1 Arabidopsis thaliana At1g30210/F12P21_11 mRNA, complete cds. | |||
GenBank | AY113898 | 1e-154 | AY113898.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-154 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478402.1 | 0.0 | PREDICTED: transcription factor TCP24-like | ||||
Swissprot | Q9C758 | 1e-164 | TCP24_ARATH; Transcription factor TCP24 | ||||
TrEMBL | R0I1L0 | 1e-170 | R0I1L0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010478402.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13840 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-111 | TCP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|