PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g043090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 465aa    MW: 53069.1 Da    PI: 8.9221
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g043090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK23.11.5e-07130154226
          RWP-RK   2 ekeisledlskyFslpikdAAkeLg 26 
                     ek++sl++l++yFs+++kdAAk+Lg
  Csa17g043090.1 130 EKNVSLNVLQQYFSGSLKDAAKSLG 154
                     89*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF010803.6E-294114IPR001108Peptidase A22A, presenilin
PfamPF071037.2E-44211415IPR010775Protein of unknown function DUF1365
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016485Biological Processprotein processing
GO:0016021Cellular Componentintegral component of membrane
GO:0004190Molecular Functionaspartic-type endopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
TAAYSESDSD SSWDKFVGAF LNSLVFVAAI TVATFVLVLL FYLRCVKFLK FYMGFSAFIV  60
LGNLGGEILV LLIDRFRFPI DCITFLILLF NFSVVGVFAV FMSKFSILVT QGYLDISGTK  120
RSEKKKSSTE KNVSLNVLQQ YFSGSLKDAA KSLGGETLKG YRRDMELLYL LCSILYSSLT  180
SFLLSLLLPF RFLLHRLFPS RFAVDPNVSF YQGTVWHDRL RPVRHSFRYS VRYALFDLDE  240
AITTPPDHLS ADEARRVSRT TGPIYLLTIP PSVGYEQNPL SLYYCYDLDG SSKRLTKCIA  300
QVTNTPWGER VTFVFEPESD LVAKSLQVSP FMDMLGNWKI RANEPGEELS VSIESKHPHL  360
GNYFSATLKA KRIPTTLVSD PALFFWLMPH KVAVWIYWHA LKLWWKNVPF IQHPRYSNPS  420
YREDSEKRDQ ELRCRGLDGS NADNCSSSFG GCRFAWRDAN WPWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g043090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3170700.0AK317070.1 Arabidopsis thaliana AT1G30130 mRNA, complete cds, clone: RAFL21-16-J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478388.10.0PREDICTED: uncharacterized protein LOC104757357
RefseqXP_010478389.10.0PREDICTED: uncharacterized protein LOC104757357
RefseqXP_010478390.10.0PREDICTED: uncharacterized protein LOC104757357
TrEMBLA0A178W4D50.0A0A178W4D5_ARATH; Uncharacterized protein
TrEMBLQ8L8W20.0Q8L8W2_ARATH; Uncharacterized protein
STRINGXP_010478388.10.0(Camelina sativa)