PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g042880.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 347aa MW: 38645.4 Da PI: 4.9177

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g042880.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.5e-05	294	330	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a++L +Av+Y+ksL Csa17g042880.1 294 RRKMKKMMGVLRRIVPGG-----EQMNTASVLDEAVQYLKSL 330 899***********95.....68*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.007	281	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.13E-6	294	335	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.0E-6	294	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.05E-7	294	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MCIVVNKKGN RSLKEIGTFM MTTCFIANYQ SVQVCQAEYF RQLLKPKYCE VLRIWFSEEL 60 SVGGASGLGV TEQLEAYKGE SIGSRNFEAA CKFENNNQYP HFSDEVGDRN MYHNPYASGS 120 SYDALFPPCA KLPYHGVELQ PSEVCPKNFV IFDQTYDHSQ VMYHPELTHK LMNNPSLNAL 180 ASTFQNEYAG GSYYGNYDQE VSSSHQEDPN EIDALLSADE DYEDDDNEGH EEGDSKEVST 240 ARNSYRDYGN SSAESCCSSY GYNNNNNNNS SSNNNARKQS ISGSASSSND GKGRRKMKKM 300 MGVLRRIVPG GEQMNTASVL DEAVQYLKSL KFEAQKLGVG HYSNQS*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MCIVVNKKGN RSLKEIGTFM MTTCFIANYQ SVQVCQAEYF RQLLKPKYCE VLRIWFSEEL  60
SVGGASGLGV TEQLEAYKGE SIGSRNFEAA CKFENNNQYP HFSDEVGDRN MYHNPYASGS  120
SYDALFPPCA KLPYHGVELQ PSEVCPKNFV IFDQTYDHSQ VMYHPELTHK LMNNPSLNAL  180
ASTFQNEYAG GSYYGNYDQE VSSSHQEDPN EIDALLSADE DYEDDDNEGH EEGDSKEVST  240
ARNSYRDYGN SSAESCCSSY GYNNNNNNNS SSNNNARKQS ISGSASSSND GKGRRKMKKM  300
MGVLRRIVPG GEQMNTASVL DEAVQYLKSL KFEAQKLGVG HYSNQS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	300	GRRKMKKMM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g042880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC008030	0.0	AC008030.4 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence.
GenBank	AC022455	0.0	AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence.
GenBank	AF361607	0.0	AF361607.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	AK230374	0.0	AK230374.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-M05.
GenBank	AK318702	0.0	AK318702.1 Arabidopsis thaliana AT1G29950 mRNA, complete cds, clone: RAFL07-45-G13.
GenBank	AY074843	0.0	AY074843.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010478369.2	0.0	PREDICTED: transcription factor bHLH144-like
Swissprot	Q9ASX9	1e-123	BH144_ARATH; Transcription factor bHLH144
TrEMBL	A0A0D3D5V8	1e-127	A0A0D3D5V8_BRAOL; Uncharacterized protein
STRING	XP_010478368.1	1e-133	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	1e-120	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]