PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g042800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 288aa MW: 32606.3 Da PI: 8.1407 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.2 | 4e-34 | 141 | 198 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ Csa17g042800.1 141 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFHDPSIVITTYEGKHNHP 198 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 2.9E-96 | 2 | 287 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 5.5E-36 | 125 | 200 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-30 | 132 | 200 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.304 | 135 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-40 | 140 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 141 | 198 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MDDHVEHKNT SSEEVSFMSL TDCLQSSLVM DYNSLEKVFK FPPYSSLFQP VSPSNTGPIV 60 NNPYLNLNSN SPVVSSSSNE ADPKENPNET KSDRMEDIEG DQHGVGESSK QVTKQGKKKG 120 EKKEREARVA FMTKSEIDHL EDGYRWRKYG QKAVKNSPYP RSYYRCTTQK CNVKKRVERS 180 FHDPSIVITT YEGKHNHPIP STLRGTVTAE HLLGHRGGGS NFLHSFPRHH QEFLMAKHPP 240 ANYQRVVSMS YEQGHVINSY NNNNHQPGVD YGLLQDIVPS MLLKHES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-30 | 130 | 201 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-30 | 130 | 201 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00168 | DAP | Transfer from AT1G29860 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g042800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF421158 | 0.0 | AF421158.1 Arabidopsis thaliana WRKY transcription factor 71 (WRKY71) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478361.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
Swissprot | Q93WV4 | 1e-153 | WRK71_ARATH; WRKY transcription factor 71 | ||||
TrEMBL | R0I3Y3 | 1e-156 | R0I3Y3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010478361.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13911 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 1e-139 | WRKY DNA-binding protein 71 |
Publications ? help Back to Top | |||
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