PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g039320.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 1729aa MW: 194398 Da PI: 4.9396

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g039320.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	45	100	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+++ +++yps+++r++L++kl+Lt+rq ++WF+ rR k+kk Csa17g039320.1 45 PKRQMKTPFQLETLEKVYSEEKYPSEATRADLSDKLNLTDRQLQMWFCHRRLKDKK 100 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-19	19	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.48E-16	36	101	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.536	41	101	IPR001356	Homeobox domain
SMART	SM00389	8.8E-18	43	105	IPR001356	Homeobox domain
Pfam	PF00046	7.4E-17	45	100	IPR001356	Homeobox domain
CDD	cd00086	1.50E-14	46	100	No hit	No description
SMART	SM00571	4.6E-24	562	621	IPR018501	DDT domain
PROSITE profile	PS50827	18.031	562	621	IPR018501	DDT domain
Pfam	PF02791	9.4E-18	563	618	IPR018501	DDT domain
Pfam	PF05066	9.1E-16	744	811	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	7.8E-7	944	985	IPR028942	WHIM1 domain
Pfam	PF15613	4.5E-13	1119	1191	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1729 aa Download sequence Send to blast
MEMGSDEEED HQIRSVADGG GGGGGSSNNK KKNKIDNSSS SSAKPKRQMK TPFQLETLEK 60 VYSEEKYPSE ATRADLSDKL NLTDRQLQMW FCHRRLKDKK DDQSLSSKTP VKSAVPAVRP 120 PPPALASSVN DLPPSRSVPE QDSGSGSDSG SGCSPYSDSR RNFASGSSSS RAELDEYETM 180 GKPSYEPRLS AMVRRAIVCI EAQLGEPLRD DGPILGMEFD PLPPGAFGTP IAMQKHLLHP 240 YESKMYEPHD VRPRRSQAAA RSFHEQQSLD DPSSFTPEVY GRYSENHAHG MDYEIAHPRS 300 SSFMHENGSL PRSYGTPGYV SRNCSTSQQD MPSPIVASAH RGDRFLMEKD SSVLGTEDPY 360 MLSDGVRKSN DVHRKGKIHD VRLGRGSETR ENRGPKDLEK LEIQKKKNEE RMRKEMERNE 420 RERRKEEERL MRERIKEEER LQREQRREME RREKFLQREN ERAEKKKQKE EIRREKDAIR 480 RKIAIEKATA RRIAKESMDL IEDEQLELME LAAISKGLPS VLQLDHDTLQ NLELYRDSLS 540 TFPPKGLQLK MPFAISPWKD SDESVGNLLM VWRFLTSFSD VLDLWPFTLD EFIQAFHDYD 600 SRLLGEIHVT LLRSIIRDIE DVARTPFSGI GNNQYTTANP EGGHPQIVEG AYAWGFDIRS 660 WKKNLNSLTW PEVLRQLALS TGLGPRLKKK NSRLTHTGDK DEAKGCEDII STIRSGSAAE 720 SAFALMREKG LLAPRKSRHR LTPGTVKFAA FHVLSLEGSK GLTVLELADK IQKSGLRDLT 780 TSKTPEASIS VALTRDVKLF ERIAPSTYCV RAPYVKDPAD GETILADARK KIRAFESGLT 840 GPEDVNDLER DEDFEIDIDE DPEVDDLATL ASASKTADLG EANILSGKGG DTMFCDVKAG 900 VKSEIEKEFS SPLPSSIKSI VPQHNERLKD TAVGCVDAMV DESNEGQSWI QGLTEGDYCH 960 LSVEERLNAL VALVGIANEG NSIRAGLEDR MEAANSLKKQ MWAEAQLDNS CMRDVLKLDF 1020 QNLANSKTES TMGLPIIQSS NREKDNFDRD PSELLDETKP LEVVSNDLRQ SSADRGLINQ 1080 ESNISQENCS FQQGYASKRS RSQLKSYIGH KAEEVYPYRS LPVGQDRRHN RYWLFAASAS 1140 KSDPSSGLLF VELHDGKWLL IDSEEAFDTL VASLDMRGIR ESHLRIMLQK IEGSFKENAR 1200 KNMKLARNPF LKEKSVMNHS PTDSVSPSSA VSGSNSDSME TSNSIRVELG RNDTEKKSLS 1260 KRFHDFQRWM WTETYSSLPS CARKYGKKRS ELLATCALCV ASYLSEYTHC TSCHQRLDMV 1320 NGSEILDLGL TVSPLPFGVR LLKPLLVFLE ASIPDEALES FWTEDKRKMW GFRLNASSSP 1380 EELLQVLTTL ETAIKKEYLS SNFMSAKELL GVGDADADTW GSVDVLPWIP KTVSAVALRL 1440 SELDASIIYV KPEKPDLIPE DENEQISLFP GDSLFKGKGP REQEDQDEVV PNLGNRRSNK 1500 RARVSLGSGS NKKVKRKKAQ GGPNRFVVSR RNVAVDNNLM SMELNHQIPG RGKRTVRKRP 1560 ERINEDNDHL VNRMADIVRP KTQEIEEDEE EEEQTFRDID EDWAAGETPR EMDEDWANET 1620 PNRMMTPMQV DDESDNSVGV ESEDDDVDGQ FVDYSQRNKW GLDWNSNANE AAMEDEEEEE 1680 VVGVERVEGE DDAEMSESSE DDDDDVPANN AANNYDRESE GGYSSSDS*

Sequence ? help Back to Top

Protein Sequence Length: 1729 aa Download sequence Send to blast

MEMGSDEEED HQIRSVADGG GGGGGSSNNK KKNKIDNSSS SSAKPKRQMK TPFQLETLEK  60
VYSEEKYPSE ATRADLSDKL NLTDRQLQMW FCHRRLKDKK DDQSLSSKTP VKSAVPAVRP  120
PPPALASSVN DLPPSRSVPE QDSGSGSDSG SGCSPYSDSR RNFASGSSSS RAELDEYETM  180
GKPSYEPRLS AMVRRAIVCI EAQLGEPLRD DGPILGMEFD PLPPGAFGTP IAMQKHLLHP  240
YESKMYEPHD VRPRRSQAAA RSFHEQQSLD DPSSFTPEVY GRYSENHAHG MDYEIAHPRS  300
SSFMHENGSL PRSYGTPGYV SRNCSTSQQD MPSPIVASAH RGDRFLMEKD SSVLGTEDPY  360
MLSDGVRKSN DVHRKGKIHD VRLGRGSETR ENRGPKDLEK LEIQKKKNEE RMRKEMERNE  420
RERRKEEERL MRERIKEEER LQREQRREME RREKFLQREN ERAEKKKQKE EIRREKDAIR  480
RKIAIEKATA RRIAKESMDL IEDEQLELME LAAISKGLPS VLQLDHDTLQ NLELYRDSLS  540
TFPPKGLQLK MPFAISPWKD SDESVGNLLM VWRFLTSFSD VLDLWPFTLD EFIQAFHDYD  600
SRLLGEIHVT LLRSIIRDIE DVARTPFSGI GNNQYTTANP EGGHPQIVEG AYAWGFDIRS  660
WKKNLNSLTW PEVLRQLALS TGLGPRLKKK NSRLTHTGDK DEAKGCEDII STIRSGSAAE  720
SAFALMREKG LLAPRKSRHR LTPGTVKFAA FHVLSLEGSK GLTVLELADK IQKSGLRDLT  780
TSKTPEASIS VALTRDVKLF ERIAPSTYCV RAPYVKDPAD GETILADARK KIRAFESGLT  840
GPEDVNDLER DEDFEIDIDE DPEVDDLATL ASASKTADLG EANILSGKGG DTMFCDVKAG  900
VKSEIEKEFS SPLPSSIKSI VPQHNERLKD TAVGCVDAMV DESNEGQSWI QGLTEGDYCH  960
LSVEERLNAL VALVGIANEG NSIRAGLEDR MEAANSLKKQ MWAEAQLDNS CMRDVLKLDF  1020
QNLANSKTES TMGLPIIQSS NREKDNFDRD PSELLDETKP LEVVSNDLRQ SSADRGLINQ  1080
ESNISQENCS FQQGYASKRS RSQLKSYIGH KAEEVYPYRS LPVGQDRRHN RYWLFAASAS  1140
KSDPSSGLLF VELHDGKWLL IDSEEAFDTL VASLDMRGIR ESHLRIMLQK IEGSFKENAR  1200
KNMKLARNPF LKEKSVMNHS PTDSVSPSSA VSGSNSDSME TSNSIRVELG RNDTEKKSLS  1260
KRFHDFQRWM WTETYSSLPS CARKYGKKRS ELLATCALCV ASYLSEYTHC TSCHQRLDMV  1320
NGSEILDLGL TVSPLPFGVR LLKPLLVFLE ASIPDEALES FWTEDKRKMW GFRLNASSSP  1380
EELLQVLTTL ETAIKKEYLS SNFMSAKELL GVGDADADTW GSVDVLPWIP KTVSAVALRL  1440
SELDASIIYV KPEKPDLIPE DENEQISLFP GDSLFKGKGP REQEDQDEVV PNLGNRRSNK  1500
RARVSLGSGS NKKVKRKKAQ GGPNRFVVSR RNVAVDNNLM SMELNHQIPG RGKRTVRKRP  1560
ERINEDNDHL VNRMADIVRP KTQEIEEDEE EEEQTFRDID EDWAAGETPR EMDEDWANET  1620
PNRMMTPMQV DDESDNSVGV ESEDDDVDGQ FVDYSQRNKW GLDWNSNANE AAMEDEEEEE  1680
VVGVERVEGE DDAEMSESSE DDDDDVPANN AANNYDRESE GGYSSSDS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	100	RRLKDKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g039320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC010155	0.0	AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010478217.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	D7KCW8	0.0	D7KCW8_ARALL; HB-1
STRING	XP_010478217.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1