PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g039230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 170aa    MW: 18757.8 Da    PI: 9.6096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g039230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-181968255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrd ++    + r++lg+++t+e+Aa+a+++ + +++g
  Csa17g039230.1 19 RYRGVRKRP-WGRYAAEIRDpFK----KSRVWLGTYDTPEDAARAYDKRAIEFRG 68
                    6********.**********662....5********************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.5251976IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-221977IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-301976IPR001471AP2/ERF domain
PfamPF008475.2E-121968IPR001471AP2/ERF domain
SMARTSM003801.5E-351982IPR001471AP2/ERF domain
CDDcd000182.32E-311977No hitNo description
PRINTSPR003671.0E-102031IPR001471AP2/ERF domain
PRINTSPR003671.0E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MTPTVKTAAV KTNDGNGVRY RGVRKRPWGR YAAEIRDPFK KSRVWLGTYD TPEDAARAYD  60
KRAIEFRGAK AKTNFPYYNN NSNESLSLSL SHSTVESSVP DLNNRGSDSI SSRFPFPKIQ  120
VKSGMMVFDE RSESESSSSV VMDLSSEGGG GQRVVLDLDL NFPPPPDQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-211781368ATERF1
3gcc_A6e-211781368ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g039230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478206.11e-122PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotQ9C5I33e-77ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLR0IGP46e-88R0IGP4_9BRAS; Uncharacterized protein
STRINGXP_010478206.11e-121(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-62ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dubois M, et al.
    The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.
    Plant Physiol., 2015. 169(1): p. 166-79
    [PMID:25995327]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]