PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g037850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CO-like | ||||||||
Protein Properties | Length: 459aa MW: 51165.4 Da PI: 6.3484 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.1 | 5.5e-06 | 6 | 38 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++e + lfC+ + lC C ++ H Csa17g037850.1 6 RAPCDFCGERAAVLFCRADTAKLCLPCDQHVHT 38 678******99******************9994 PP | |||||||
2 | zf-B_box | 20.4 | 1.1e-06 | 49 | 80 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+++++++++ C++++ lC++C H Csa17g037850.1 49 SQICDNCGNEPVSVRCFTDNFVLCQECDWDVH 80 689************************98777 PP | |||||||
3 | CCT | 60.1 | 7.7e-21 | 409 | 453 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R +a++RYk+Kr++R+++K+irYesRKa+A++R Rv+GrFvk++e Csa17g037850.1 409 RGNAMQRYKKKRNKRRYDKTIRYESRKARADTRLRVRGRFVKASE 453 7789**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.471 | 4 | 51 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-12 | 4 | 51 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.90E-7 | 8 | 51 | No hit | No description |
CDD | cd00021 | 1.33E-6 | 51 | 80 | No hit | No description |
SMART | SM00336 | 1.9 | 52 | 94 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.1E-15 | 409 | 451 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.436 | 409 | 451 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MGRSERAPCD FCGERAAVLF CRADTAKLCL PCDQHVHTAN LLSRKHVRSQ ICDNCGNEPV 60 SVRCFTDNFV LCQECDWDVH GSCSVSDAHV RSAVEGFSGC PSALELGALW GIDLEGGRKE 120 KEEEESQVPM MENFGMQLDS WVLGSDVVLE ELIVPSDTTF KKRGSSSSCG RYKQVLCKQL 180 EELLKNDIVV VGGGDDGDDD DDRVGDCDGD GEGIMVPEMP ERFEWGRDVE EIYGRELPQK 240 TSFTPLQWKD TNPSGGQSSQ VQIYLCFDCF SHGCCFVYSL CLVNLQIWDF NLGQSRGPED 300 TSRMEAAYVA KGAASFTINN FVDNMNETCS TNVKGVKRIC KDDYKRSTSG QVQPTTSESN 360 HHSITFGSEK ASKSSSNDLH FTKHIAGTSC KTTRLLATKA DLERLAQNRG NAMQRYKKKR 420 NKRRYDKTIR YESRKARADT RLRVRGRFVK ASEAPYPI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g037850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019095219.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 15-like | ||||
Swissprot | Q9C7E8 | 0.0 | COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15 | ||||
TrEMBL | D7KCS1 | 0.0 | D7KCS1_ARALL; Zinc finger (B-box type) family protein | ||||
STRING | XP_010478156.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3871 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28050.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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