PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g035180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 283aa    MW: 32681.5 Da    PI: 5.6782
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g035180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-161865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll +++   G g+W++ a+  g++Rt+k+c++rw++yl
   Csa17g035180.1 18 KGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGLKRTGKSCRLRWLNYL 65
                     79********************************************97 PP

2Myb_DNA-binding52.41.2e-1671114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   Csa17g035180.1  71 RGNLTPQEQLLILELHSKWGNR-WSKIAKYLP-GRTDNDIKNYWRT 114
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3531365IPR017930Myb domain
SuperFamilySSF466891.91E-3016112IPR009057Homeodomain-like
SMARTSM007171.2E-131767IPR001005SANT/Myb domain
PfamPF002491.9E-141865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-221972IPR009057Homeodomain-like
CDDcd001671.03E-92065No hitNo description
PROSITE profilePS5129426.01566120IPR017930Myb domain
SMARTSM007172.6E-1570118IPR001005SANT/Myb domain
PfamPF002499.8E-1671114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2373119IPR009057Homeodomain-like
CDDcd001671.21E-1175114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSNTIRYNGN DEGAEQRKGP WTLEEDTLLT NYISHNGEGR WNLLAKSSGL KRTGKSCRLR  60
WLNYLKPDIK RGNLTPQEQL LILELHSKWG NRWSKIAKYL PGRTDNDIKN YWRTRVQKQA  120
RQLNIDSNSH KFLEVVRSFW VPRLIHKMKD NSNTNTKATP PDLLGPVLQD NNFSPDCSNM  180
DFSTSMSVDL KKNSQFMESD IETTCSLYLD GSRGSSSQCV SEDYSSFPCL EEEYMVTFMG  240
NSDILALQDC HVADSTYEDD VTQDPMWNMD DIWQFKEYAH FN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25181207108B-MYB
1mse_C4e-25181204105C-Myb DNA-Binding Domain
1msf_C4e-25181204105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g035180.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3348150.0AF334815.2 Arabidopsis thaliana putative transcription factor (MYB116) mRNA, complete cds.
GenBankAY5195580.0AY519558.1 Arabidopsis thaliana MYB transcription factor (At1g25340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477945.10.0PREDICTED: transcription factor MYB108-like isoform X2
SwissprotQ9C9G71e-104MYB62_ARATH; Transcription factor MYB62
TrEMBLR0GKF71e-180R0GKF7_9BRAS; Uncharacterized protein
STRINGXP_010477944.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-170myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]