PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g035180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 32681.5 Da PI: 5.6782 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll +++ G g+W++ a+ g++Rt+k+c++rw++yl Csa17g035180.1 18 KGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGLKRTGKSCRLRWLNYL 65 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Csa17g035180.1 71 RGNLTPQEQLLILELHSKWGNR-WSKIAKYLP-GRTDNDIKNYWRT 114 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.353 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-30 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-9 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 26.015 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-16 | 71 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 73 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-11 | 75 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MSNTIRYNGN DEGAEQRKGP WTLEEDTLLT NYISHNGEGR WNLLAKSSGL KRTGKSCRLR 60 WLNYLKPDIK RGNLTPQEQL LILELHSKWG NRWSKIAKYL PGRTDNDIKN YWRTRVQKQA 120 RQLNIDSNSH KFLEVVRSFW VPRLIHKMKD NSNTNTKATP PDLLGPVLQD NNFSPDCSNM 180 DFSTSMSVDL KKNSQFMESD IETTCSLYLD GSRGSSSQCV SEDYSSFPCL EEEYMVTFMG 240 NSDILALQDC HVADSTYEDD VTQDPMWNMD DIWQFKEYAH FN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 18 | 120 | 7 | 108 | B-MYB |
1mse_C | 4e-25 | 18 | 120 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-25 | 18 | 120 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00159 | DAP | Transfer from AT1G25340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g035180.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF334815 | 0.0 | AF334815.2 Arabidopsis thaliana putative transcription factor (MYB116) mRNA, complete cds. | |||
GenBank | AY519558 | 0.0 | AY519558.1 Arabidopsis thaliana MYB transcription factor (At1g25340) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010477945.1 | 0.0 | PREDICTED: transcription factor MYB108-like isoform X2 | ||||
Swissprot | Q9C9G7 | 1e-104 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | R0GKF7 | 1e-180 | R0GKF7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010477944.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2632 | 25 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25340.1 | 1e-170 | myb domain protein 116 |
Publications ? help Back to Top | |||
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