PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g035170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 796aa    MW: 91283.6 Da    PI: 6.391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g035170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.00026139193438
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C......................TTS-S CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.as...................kapskKl 38 
                     ++ + E+r+R ++ + f   r++lP+ ++                   +a+++K+
  Csa17g035170.1 139 KKTILEQRYRTNVGELFGHVRKCLPWaDPkivkkliddkmyellgektAADNEKP 193
                     56899*********************55577777777777777776664444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045584.3E-5510167IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045571.2E-9170263IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
CDDcd008073.40E-145270580No hitNo description
PfamPF007499.8E-118270575IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
Gene3DG3DSA:3.40.50.6203.3E-38270339IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523741.02E-86270584No hitNo description
TIGRFAMsTIGR004401.4E-189271792IPR004514Glutamine-tRNA synthetase
PRINTSPR009873.3E-6274286IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780277288IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009873.3E-6303316IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.102.4E-43343447No hitNo description
PRINTSPR009873.3E-6448458IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6203.3E-38450499IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.105.8E-31500577IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
PfamPF039507.5E-42578770IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
SuperFamilySSF507151.2E-57578789IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
Gene3DG3DSA:2.40.240.101.2E-29586696IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.105.2E-29697788IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MVLKDDNSEK SLELFLSIGL DERTARNTIN NNKVTANLTA VIYEAAVTDG CDRTTGNLLY  60
SVATKYPTNA LVHRPTLLKY IVTSKIKTPA QLEAAFAFFA NTGPEDFKLN EFEEACGVGI  120
EVSPEDIEKA VKDIFEENKK TILEQRYRTN VGELFGHVRK CLPWADPKIV KKLIDDKMYE  180
LLGEKTAADN EKPTKKKEKK EKPAKNEEKK AVVEATPEPS EEDLNPYSIF PQPEQNNMVH  240
TEVFFSGGSV LRCSNSKEVL DKHLKVTGGK VYTRFPPEPN GYLHIGHAKA MFVDFGLAKE  300
RGGCCYLRYD DTNPEAEKEE YINHIEEIVK WMGWEPFKIT YTSDYFQELY DLAVELIRRG  360
HAYVDHQTGE EIKEYREKKM NSPWRDRPVE ESLKLFDEMR RGMIEEGKAT LRMKQDMQSD  420
NFNMYDLIAY RIKFAPHPKA GDKWCIYPSY DYAHCTVDSL ENITHSLCTL EFETRRASYY  480
WLLHSLDLYM PYVWEYSRLN VTNTVMSKRK LNYIVTNKYV DGWDDPRLLT LAGLRRRGVT  540
STAINAFVRG IGITRSDGSM IHVSRLEHHI REELNKTAPR TMVVLNPLKV VITNLESDKV  600
MELDAKRWPD AQNDDPSAFY KVPFSRVIYI DQSDFRMKDS KDYYGFAPGK SVLLRYAFPI  660
KCTNVVFADD NETVREIHAE YDPEKKSKPK GVLQWVGESS PGKEPLKVEV RLFEKLFNSE  720
NPAELNDDWL TDINPNSKVV VSGAYAVSTL KDAAVGDRFQ FERLGYYAVD KDSEPGKLVF  780
NRTVTLRDSY GKGGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C0.01179230798Glutamine--tRNA ligase
4ye6_A0.0117927775Glutamine--tRNA ligase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g035170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0625940.0AY062594.1 Arabidopsis thaliana Unknown protein (F4F7.3) mRNA, complete cds.
GenBankAY1146530.0AY114653.1 Arabidopsis thaliana unknown protein (At1g25350) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477943.10.0PREDICTED: glutamine--tRNA ligase, cytoplasmic
SwissprotQ8W4F30.0SYQ_ARATH; Glutamine--tRNA ligase, cytoplasmic
TrEMBLA0A178WCP20.0A0A178WCP2_ARATH; OVA9
STRINGXP_010477943.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM425234
Publications ? help Back to Top
  1. Duchêne AM, et al.
    Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(45): p. 16484-9
    [PMID:16251277]
  2. Berg M,Rogers R,Muralla R,Meinke D
    Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis.
    Plant J., 2005. 44(5): p. 866-78
    [PMID:16297076]