PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g034920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 363aa    MW: 40604.1 Da    PI: 8.677
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g034920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.72.4e-32221276156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rF++a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+
  Csa17g034920.1 221 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLH 276
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-28218279IPR009057Homeodomain-like
PROSITE profilePS5129414.288218278IPR017930Myb domain
SuperFamilySSF466898.06E-18219279IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-27221276IPR006447Myb domain, plants
PfamPF002492.6E-7223274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDDYTHKMKR CHEYVEALEE EHKKILVFQR ELPLCLELVT QAIESCRKEL SGSSSMSEHV  60
RSPSECSERT TSECGGGGAA VFEEFIPIKW SSSSSSDHEN DKDGADEKKM KMNNESNGDK  120
KKSDWLRSVQ LWNQSPDPQP KEDDHQVINK KAAAAVIEVK RNNAGAFQPF QKEKPNKAND  180
HSPQPLKTIS PTPTTTSSST AETVGGKSEF EQLKQSHSNR KQRRCWSPEL HRRFLHALQQ  240
LGGSHVATPK QIRDLMKVDG LTNDEVKSHL QKYRLHTRRP ATPSSTNGGE NPQQQQQRQF  300
MVVEGIWVPS SHDRATNTRV YAPIATQPPP QSSPSGERSS SHRCKSPATS SSTHTQHLLP  360
LS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g034920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3268906e-85AF326890.1 Arabidopsis thaliana unknown protein (At1g25550) mRNA, complete cds.
GenBankAF3397076e-85AF339707.1 Arabidopsis thaliana unknown protein (At1g25550) mRNA, complete cds.
GenBankAF3729066e-85AF372906.1 Arabidopsis thaliana At1g25550/F2J7_21 mRNA, complete cds.
GenBankAY0859136e-85AY085913.1 Arabidopsis thaliana clone 1959 mRNA, complete sequence.
GenBankBT0026746e-85BT002674.1 Arabidopsis thaliana At1g25550/F2J7_21 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477909.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9FPE81e-166HHO3_ARATH; Transcription factor HHO3
TrEMBLR0GQJ31e-178R0GQJ3_9BRAS; Uncharacterized protein
STRINGXP_010477909.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-154G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]