PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g034910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | RAV | ||||||||
Protein Properties | Length: 364aa MW: 40376.4 Da PI: 9.551 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.7 | 1.2e-12 | 70 | 118 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAa ++ a+++++g Csa17g034910.1 70 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAATSYDIAARRFRG 118 89****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 102.6 | 2.2e-32 | 194 | 302 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ tpsdv+k++rlv+pk++ae+h + ++++++ + led++g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F Csa17g034910.1 194 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpamtttamgmSPSPAKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCF 288 89*****************************99999988666789************************************************** PP EE-SSSEE..EEEE CS B3 83 kldgrsefelvvkv 96 +++ +++l++ + Csa17g034910.1 289 ERSTGPDRQLYIDW 302 *8766777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.26E-25 | 70 | 125 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-17 | 70 | 126 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.0E-7 | 70 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-20 | 71 | 126 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-28 | 71 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.941 | 71 | 126 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-40 | 187 | 307 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-31 | 192 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.71E-29 | 193 | 291 | No hit | No description |
Pfam | PF02362 | 4.0E-29 | 194 | 302 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-25 | 194 | 306 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.972 | 194 | 306 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MDYSCVVDDS STTSESLSIS TPKEMMNKLS SPPPPPSTTT RLYRMGSGGS SVVLDSDNGV 60 ETESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAATSYD IAARRFRGRD 120 AVTNFKSPTT TDAESAFLDA HSKAEIVDML RKHTYADELE QSRRKFVNGN GNRCGSETAV 180 SSNDAVSRAR EVLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLPAMTTTAM GMSPSPAKGV 240 LINLEDRTGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDVVCFER STGPDRQLYI 300 DWKVRSSPVQ TVVRLFGVNI FNVTTTGNPN DVAVECGGGK KRSREDDLFS LGCSKKQTMI 360 NIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-57 | 191 | 306 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g034910.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079281 | 0.0 | AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence. | |||
GenBank | AY091069 | 0.0 | AY091069.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g25560) mRNA, complete cds. | |||
GenBank | AY122941 | 0.0 | AY122941.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g25560) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010477910.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like | ||||
Swissprot | Q9C6M5 | 0.0 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | D7KQU4 | 0.0 | D7KQU4_ARALL; Uncharacterized protein | ||||
STRING | XP_010477910.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 0.0 | RAV family protein |