PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g034630.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 396aa MW: 43981 Da PI: 5.7781

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g034630.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.9e-09	236	284	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Csa17g034630.1 236 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 284 58***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-16	231	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.90E-11	231	288	No hit	No description
PROSITE profile	PS50888	15.497	233	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-16	234	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-6	236	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.8E-9	239	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MDMSDKDEFA AKKRDLDWRI SDSNNPIVSY PPENPMSAPS QMMDESFRQN LWHDCGFNVQ 60 TDAGTSFRGN VDRPLEMGGW NMAQFPADSG FIERAAKFSF FGCGSFGEMM MNQHSNGLFV 120 QDMEKNQIGV ATGSKLVDGP VKVVKENGSS DVSEDSQSSG GNNGHDDAKC MEISSKVFNA 180 KKRKRTVKDS EQEDKKEKDE QSPNSNANKT NSGKQASDPL KDGYIHMRAR RGQATNSHSL 240 AERVRREKIS ERMKFLQDLV PGCDKVTGKA VMLDEIINYV QSLQCQIEFL SMKLSAVNPV 300 LDFNLESLLA KDSLHVPAPT FPQDMSMLYP PLSHLSQKGF MQPNLSSLST LNGGLKRQDT 360 HGYESDQHNV VHMNHETSTA PDHEKNTTAN TEVEP*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MDMSDKDEFA AKKRDLDWRI SDSNNPIVSY PPENPMSAPS QMMDESFRQN LWHDCGFNVQ  60
TDAGTSFRGN VDRPLEMGGW NMAQFPADSG FIERAAKFSF FGCGSFGEMM MNQHSNGLFV  120
QDMEKNQIGV ATGSKLVDGP VKVVKENGSS DVSEDSQSSG GNNGHDDAKC MEISSKVFNA  180
KKRKRTVKDS EQEDKKEKDE QSPNSNANKT NSGKQASDPL KDGYIHMRAR RGQATNSHSL  240
AERVRREKIS ERMKFLQDLV PGCDKVTGKA VMLDEIINYV QSLQCQIEFL SMKLSAVNPV  300
LDFNLESLLA KDSLHVPAPT FPQDMSMLYP PLSHLSQKGF MQPNLSSLST LNGGLKRQDT  360
HGYESDQHNV VHMNHETSTA PDHEKNTTAN TEVEP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	185	KKRKRT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g034630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010477873.1	0.0	PREDICTED: transcription factor bHLH76-like
Swissprot	Q9C670	0.0	BH076_ARATH; Transcription factor bHLH76
TrEMBL	R0IDB9	0.0	R0IDB9_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010477873.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16689	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.2	0.0	cryptochrome-interacting basic-helix-loop-helix 5

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]