PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g034070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 405aa    MW: 46391.4 Da    PI: 6.9468
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g034070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-16142187147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v  +G+ +W++Ia++++ gR++k+c++rw++ 
   Csa17g034070.1 142 RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 187
                      899*****************************.***********996 PP
2Myb_DNA-binding58.41.6e-18194237146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++++k++w+ 
   Csa17g034070.1 194 RRAFTEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNSVKNHWHV 237
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.08137188IPR017930Myb domain
SMARTSM007176.5E-14141190IPR001005SANT/Myb domain
SuperFamilySSF466892.06E-28142235IPR009057Homeodomain-like
PfamPF002491.4E-15142187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-26143195IPR009057Homeodomain-like
CDDcd001674.76E-12145186No hitNo description
PROSITE profilePS5129427.533189243IPR017930Myb domain
SMARTSM007174.4E-15193241IPR001005SANT/Myb domain
PfamPF002493.5E-15194236IPR001005SANT/Myb domain
CDDcd001671.31E-11196236No hitNo description
Gene3DG3DSA:1.10.10.603.2E-21196242IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MNSHKSFSSD GNSLKADVTS LSYLNNYTSL LLSSSVHNNS SMFITEKQLW MDEIDARRAS  60
SSSWDFPFND ININQNHHHR HCNTSHEFEI LKKSPLGDIA ANEEESNNHN PNFSNSESAK  120
KETTDSGQSW SSSSSKPSTL GRGHWRPAED VKLKELVSIY GPQNWNLIAE KLQGRSGKSC  180
RLRWFNQLDP RINRRAFTEE EEERLMQAHR IYGNKWAMIA RLFPGRTDNS VKNHWHVIMA  240
RKYREHSSAY RRRKLMNNNP LKSHLTTTHH PNPNPNYHSF LSTNHYFAQP FPEFNLAHHL  300
VNNAPITSDH NQLVLPFHCF QGYESIDTPM VVSMFGNQMM VGDNVGATSD ALYNFPYIDP  360
RSQEKADPDE PMNWIGTEAV DEEVVEKAKK EPHFFDFLGL GTGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-311402425107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g034070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3348160.0AF334816.1 Arabidopsis thaliana putative transcription factor (MYB117) mRNA, complete cds.
GenBankAY5195590.0AY519559.1 Arabidopsis thaliana MYB transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ4462910.0DQ446291.1 Arabidopsis thaliana clone pENTR221-At1g26780 myb family transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ6528620.0DQ652862.1 Arabidopsis thaliana clone 0000017266_0000012084 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477813.10.0PREDICTED: snRNA-activating protein complex subunit 4 homolog
SwissprotQ9LQX50.0MY117_ARATH; Transcription factor MYB117
TrEMBLD7KQL70.0D7KQL7_ARALL; T24P13.16
STRINGXP_010477813.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.20.0myb domain protein 117
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Colling J, et al.
    Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.
    Plant Signal Behav, 2016. 11(4): p. e1143998
    [PMID:26967827]