PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g033960.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 531aa MW: 60317.3 Da PI: 5.9801

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g033960.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.2	1.3e-52	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 l pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ Csa17g033960.1 16 LLPGFRFHPTDEELVSFYLKRKVQHNPLSI-ELIRQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSS 109 579*************************.89***********7777889***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl Csa17g033960.1 110 eGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143 56667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-59	12	175	IPR003441	NAC domain
PROSITE profile	PS51005	57.532	16	175	IPR003441	NAC domain
Pfam	PF02365	1.9E-25	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MGERNDDGDQ KMEEVLLPGF RFHPTDEELV SFYLKRKVQH NPLSIELIRQ LDIYKYDPWD 60 LPKFAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT GTDRPIYSSE GNKCIGLKKS 120 LVFYKGRAAK GVKTDWMMHE FRLPSLSEPS PPSKRFFDSP VSPNDSWAIC RIFKKTNTTT 180 LRALSHSFVS SLPPETSTDT MSDQKPSNTY HFSSDKILKT SSHYQFHHEN MNTPKTSNST 240 TPTVATISPF SYLDLTSYDK PLNVFTPVSC LEQQYLTNLF LSTQETQPQF PRPTLSNEIP 300 SFLLNTSSDS TYLGMGEYTN HIDLSAVLAQ EECPALFHHE NMNTPKTSNS TTPTVATISP 360 FSYLDLTSYD KPLNVFTPVS CLEQQYLTNL FLSTQETQPQ FPRPTLSNEI PSFLLNTSSD 420 STYLGMGEYT NHIDLSAVLA QEECPALVSL PQEYQEKGFE GNGVMKNMRG SSEDHHGHCD 480 TLRYDDFAST IDESHHHHHQ ELKQNMTLLE SYYSSLSSIN GDLPVCFSTT *

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MGERNDDGDQ KMEEVLLPGF RFHPTDEELV SFYLKRKVQH NPLSIELIRQ LDIYKYDPWD  60
LPKFAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT GTDRPIYSSE GNKCIGLKKS  120
LVFYKGRAAK GVKTDWMMHE FRLPSLSEPS PPSKRFFDSP VSPNDSWAIC RIFKKTNTTT  180
LRALSHSFVS SLPPETSTDT MSDQKPSNTY HFSSDKILKT SSHYQFHHEN MNTPKTSNST  240
TPTVATISPF SYLDLTSYDK PLNVFTPVSC LEQQYLTNLF LSTQETQPQF PRPTLSNEIP  300
SFLLNTSSDS TYLGMGEYTN HIDLSAVLAQ EECPALFHHE NMNTPKTSNS TTPTVATISP  360
FSYLDLTSYD KPLNVFTPVS CLEQQYLTNL FLSTQETQPQ FPRPTLSNEI PSFLLNTSSD  420
STYLGMGEYT NHIDLSAVLA QEECPALVSL PQEYQEKGFE GNGVMKNMRG SSEDHHGHCD  480
TLRYDDFAST IDESHHHHHQ ELKQNMTLLE SYYSSLSSIN GDLPVCFSTT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-55	16	178	20	171	NAC domain-containing protein 19
3swm_B	2e-55	16	178	20	171	NAC domain-containing protein 19
3swm_C	2e-55	16	178	20	171	NAC domain-containing protein 19
3swm_D	2e-55	16	178	20	171	NAC domain-containing protein 19
3swp_A	2e-55	16	178	20	171	NAC domain-containing protein 19
3swp_B	2e-55	16	178	20	171	NAC domain-containing protein 19
3swp_C	2e-55	16	178	20	171	NAC domain-containing protein 19
3swp_D	2e-55	16	178	20	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g033960.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005508	0.0	AC005508.1 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010477805.1	0.0	PREDICTED: protein FEZ
Swissprot	Q9ZVH0	0.0	FEZ_ARATH; Protein FEZ
TrEMBL	R0GL88	0.0	R0GL88_9BRAS; Uncharacterized protein
STRING	Bostr.12659s0312.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	0.0	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]