PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g033820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 333aa    MW: 38786.5 Da    PI: 6.1978
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g033820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.4e-1770123356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eql++Le+ Fe  +++  +++ eLA+ lgL+ rq+ +WFqNrRa+ k
  Csa17g033820.1  70 KKRRLNMEQLKTLEKNFEIGNKLESDRKIELARALGLQPRQIAIWFQNRRARSK 123
                     456899**********************************************99 PP
2Homeobox54.91.4e-17147200356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eql++Le+ Fe  +++  +++ eLA+ lgL+ rq+ +WFqNrRa+ k
  Csa17g033820.1 147 KKRRLNMEQLKTLEKNFEIGNKLESDRKIELARALGLQPRQIAIWFQNRRARSK 200
                     456899**********************************************99 PP
3HD-ZIP_I/II105.83.4e-3469139171
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayd 71 
                     ekkrrl+ eq+k+LE++Fe  +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlEkdy+ Lk+  d
  Csa17g033820.1  69 EKKRRLNMEQLKTLEKNFEIGNKLESDRKIELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDILKQYSD 139
                     69*****************************************************************9877 PP
4HD-ZIP_I/II1223e-39146238193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eq+k+LE++Fe  +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlEkdy+ Lkr++++l++ene L++++++L++++++
  Csa17g033820.1 146 EKKRRLNMEQLKTLEKNFEIGNKLESDRKIELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDILKRQFESLSDENEVLQTQNQKLQAQVMA 238
                     69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.13E-1952127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-1857125IPR009057Homeodomain-like
PROSITE profilePS5007117.0765125IPR001356Homeobox domain
SMARTSM003893.9E-1868129IPR001356Homeobox domain
CDDcd000868.98E-1470126No hitNo description
PfamPF000467.5E-1570123IPR001356Homeobox domain
PRINTSPR000317.3E-696105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000317.3E-6105121IPR000047Helix-turn-helix motif
SMARTSM0034020125169IPR003106Leucine zipper, homeobox-associated
SuperFamilySSF466891.8E-18138204IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-18140208IPR009057Homeodomain-like
PROSITE profilePS5007117.07142202IPR001356Homeobox domain
SMARTSM003893.9E-18145206IPR001356Homeobox domain
CDDcd000868.98E-14147203No hitNo description
PfamPF000467.5E-15147200IPR001356Homeobox domain
PROSITE patternPS000270177200IPR017970Homeobox, conserved site
PfamPF021831.3E-14202242IPR003106Leucine zipper, homeobox-associated
SMARTSM003400.0018202245IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSCNNGLAFF PENFSLQNHQ QQEEDHPQLL QDFNGFLGKR SPMNNVQGFC NLDMNGEEEY  60
SDDGSKMGEK KRRLNMEQLK TLEKNFEIGN KLESDRKIEL ARALGLQPRQ IAIWFQNRRA  120
RSKTKQLEKD YDILKQYSDD GSKMGEKKRR LNMEQLKTLE KNFEIGNKLE SDRKIELARA  180
LGLQPRQIAI WFQNRRARSK TKQLEKDYDI LKRQFESLSD ENEVLQTQNQ KLQAQVMALK  240
NREPIESINL NKETEGSCSD RSENISGDIR PPEIDSQFAL GHPPTATTMQ FFQNSSSEQR  300
MVKEENSISN MMFCGIDDQS GFWPWLDQQH YN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194202RRARSKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g033820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2280560.0AK228056.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-55-J15.
GenBankAY0849130.0AY084913.1 Arabidopsis thaliana clone 121220 mRNA, complete sequence.
GenBankBT0097270.0BT009727.1 Arabidopsis thaliana At1g26960 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477787.11e-140PREDICTED: homeobox-leucine zipper protein ATHB-23-like isoform X2
RefseqXP_010477788.11e-140PREDICTED: homeobox-leucine zipper protein ATHB-23-like isoform X3
RefseqXP_019094776.11e-140PREDICTED: homeobox-leucine zipper protein ATHB-23-like isoform X1
SwissprotQ8LFD31e-132ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBLR0I4581e-131R0I458_9BRAS; Uncharacterized protein
STRINGXP_010477788.11e-140(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.11e-135homeobox protein 23
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]