PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g030040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 176aa    MW: 18945.3 Da    PI: 10.5372
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g030040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-2079143155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.....kr....krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +g+W+AeIr+  ++ ng     k     +r++lg+f taeeAa a+++a+ +l g
  Csa17g030040.1  79 KKYRGVRQRP-WGKWAAEIRCdSRKaNGgggggKGgggpQRIWLGTFETAEEAALAYDNAAIQLLG 143
                     59********.**********99999777899833568***********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.2E-301173IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008475.4E-1380143IPR001471AP2/ERF domain
SMARTSM003803.1E-2980157IPR001471AP2/ERF domain
PROSITE profilePS5103221.56280151IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-1880151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-2780151IPR001471AP2/ERF domain
PRINTSPR003674.5E-128192IPR001471AP2/ERF domain
CDDcd000181.93E-2381150No hitNo description
PRINTSPR003674.5E-12117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKRIVRISFT DMEATDSSSS EDESSSSDPP SSRRRGKKLV KEIVLDSSDP QAEVRKTRFK  60
IRIPARYLAA TKTTETKKKK YRGVRQRPWG KWAAEIRCDS RKANGGGGGG KGGGGPQRIW  120
LGTFETAEEA ALAYDNAAIQ LLGPDAPTNF GRPDAAVMKL QDSDAASSAK TPSVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1777150262ATERF1
3gcc_A1e-1777150262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114GGKGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g030040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477579.11e-124PREDICTED: ethylene-responsive transcription factor ERF069-like
SwissprotQ8W4I55e-68ERF69_ARATH; Ethylene-responsive transcription factor ERF069
TrEMBLV4KWU56e-69V4KWU5_EUTSA; Uncharacterized protein
STRINGXP_010477579.11e-124(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.12e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]