PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g029550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31156 Da PI: 8.0714 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 7.1e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd+++++G g+W++ +r g+ R++k+c++rw +yl Csa17g029550.1 14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++ Csa17g029550.1 67 RGNFTEDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.153 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-31 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.85E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.836 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.37E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY 60 LRPDLKRGNF TEDEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPNTHRLIN ESAASLVVLP PPPPPSSSSL QNDEPLHLDF AGPVKPEPVL GEEISGIHNN 180 NNCTSSGTTS EKDFGNENDW VLNLELSVGP AATKSYHHRY ESTTRKVSVV DSAESNRRWG 240 SELFGGNQSD AVCLCCRVGL FHNESCRNCR NSDVRTH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 3e-29 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g029550.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY072543 | 0.0 | AY072543.1 Arabidopsis thaliana At1g22640/F12K8.1 mRNA, complete cds. | |||
GenBank | BT000841 | 0.0 | BT000841.1 Arabidopsis thaliana At1g22640/F12K8.1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010477522.1 | 0.0 | PREDICTED: transcription factor MYB3 | ||||
Swissprot | Q9S9K9 | 1e-160 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | R0IIJ8 | 1e-166 | R0IIJ8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010477522.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-150 | myb domain protein 3 |