PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g029500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 18753 Da PI: 9.931 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.4 | 2.1e-14 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i ++ r vtf kR+ g+lKK +EL +LC+ ++ ii+s+ Csa17g029500.1 11 IADNATRRVTFRKRKDGLLKKINELTILCGLPACAIIYSE 50 77888999*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.493 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-21 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.62E-21 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 1.0E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-14 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGRRKVTHQL IADNATRRVT FRKRKDGLLK KINELTILCG LPACAIIYSE YKDGPELWPN 60 VNEVRSLLDR LSELPVEKQT KYMMDQKDLM KKMIQDAEKR LEKEKWYTRA MKLGIMASTS 120 DLTTDTDCSE ELAKAAEVVD KKLKAIRERI KAVEAGAPII KRD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RRKVTHQLIADNATRRVTFRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g029500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006551 | 1e-167 | AC006551.6 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete sequence. | |||
GenBank | AY141250 | 1e-167 | AY141250.1 Arabidopsis thaliana MADS-box protein AGL87 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-167 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010460014.1 | 1e-114 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | R0GZP3 | 1e-108 | R0GZP3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010460014.1 | 1e-114 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 3e-99 | AGAMOUS-like 87 |