PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g027260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 359aa    MW: 40774 Da    PI: 6.9479
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g027260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.16.8e-373994661
          zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +s
  Csa17g027260.1 39 PACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 94
                    58**************************************************8775 PP
2zf-Dof117.16.8e-37166221661
          zf-Dof   6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +s
  Csa17g027260.1 166 PACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 221
                     58**************************************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088428.2863993IPR003851Zinc finger, Dof-type
PfamPF027012.9E-314093IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-224188IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.286166220IPR003851Zinc finger, Dof-type
PfamPF027012.9E-31167220IPR003851Zinc finger, Dof-type
PROSITE patternPS013610168204IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-22168215IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MLPYIGHNSY QQHQFPSPEM EIIPEEKWKL SYGQEVTAPA CPRCASSNTK FCYYNNYSLS  60
QPRYFCKGCR RYWTKGGSLR NIPVGGGCRK RSRSRHNSHK RFGRNENRPD GLINQDDGIQ  120
SSPAGSDIDL AAVFAHYQQH QFPSPEMEII PEEKWKLSYG QEVTAPACPR CASSNTKFCY  180
YNNYSLSQPR YFCKGCRRYW TKGGSLRNIP VGGGCRKRSR SRHNSHKRFG RNENRPDGLI  240
NQDDGIQSSP AGSDIDLAAV FAQYVTDRSP SSTDNTTGSD QDSPVTTTTN ALDSLSWDIC  300
QETDVDLGFY GEFNHLSQKT EEDQRGFGQF LQEDREEIFE FQGLLDDKEI QEILECSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221KRSRSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g027260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934720.0AB493472.1 Arabidopsis thaliana At1g21340 gene for hypothetical protein, partial cds, clone: RAAt1g21340.
GenBankAC0154470.0AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4462680.0DQ446268.1 Arabidopsis thaliana clone pENTR221-At1g21340 Dof-type zinc finger domain-containing protein (At1g21340) mRNA, complete cds.
GenBankDQ6528470.0DQ652847.1 Arabidopsis thaliana clone 0000013461_0000009694 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019094341.11e-164PREDICTED: dof zinc finger protein DOF1.2-like
SwissprotP683491e-147DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLR0GT631e-151R0GT63_9BRAS; Uncharacterized protein
STRINGXP_010459842.11e-159(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.11e-138Dof family protein