PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g026870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 1328aa    MW: 145788 Da    PI: 8.8089
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g026870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.51.3e-40143220178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv++C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+++
  Csa17g026870.1 143 MCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 220
                     6**************************************************************************875 PP
2SBP129.51.3e-40415492178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv++C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+++
  Csa17g026870.1 415 MCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 492
                     6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.6E-34138205IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.077141218IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-37142219IPR004333Transcription factor, SBP-box
PfamPF031101.2E-28144217IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.6E-34410477IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.077413490IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-37414491IPR004333Transcription factor, SBP-box
PfamPF031101.2E-28416489IPR004333Transcription factor, SBP-box
CDDcd002044.32E-1110791222No hitNo description
SuperFamilySSF484032.01E-910791227IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-810791230IPR020683Ankyrin repeat-containing domain
SMARTSM0024890011171146IPR002110Ankyrin repeat
PROSITE profilePS502979.62211221235IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2211631193IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1328 aa     Download sequence    Send to blast
MDEVGAQVAT PMFIHPSLSP MGRKRDLYYP MSNRLVPSQQ QQQPQRRDEW NSKMWDWDSR  60
RFEAKPVDAQ TLRLGNVSTT QQFDLTSRNK SGGGGGEERG LDLNLGSGLT ALEETTTTTT  120
MTQNVRPSKK VRSGSPGGGN YPMCQVDNCT EDLSHAKDYH RRHKVCEVHS KATKALVGKQ  180
MQRFCQQCSR FHLLSEFDEG KRSCRRRLAG HNRRRRKTTQ PDEIASGVVV SGNRDNNTSN  240
VNMDLMALLT ALASAQGKND VKPVTSPAVP DREQLLQILN KINALPLPMD LVSKLNNIGS  300
LARKNLDQPM ANPTNDMNGA SPSTMDLLAV LSSTLGSSSP DALAILSQGG FGNKDSDKTK  360
NKSGGGGGEE RGLDLNLGSG LTALEETTTT TTMTQNVRPS KKVRSGSPGG GNYPMCQVDN  420
CTEDLSHAKD YHRRHKVCEV HSKATKALVG KQMQRFCQQC SRFHLLSEFD EGKRSCRRRL  480
AGHNRRRRKT TQPDEIASGV VVSGNRDNNT SNVNMDLMAL LTALASAQGK NDVKPVTSPA  540
VPDREQLLQI LNKINALPLP MDLVSKLNNI GSLARKNLDQ PMANPTNDMN GASPSTMDLL  600
AVLSSTLGSS SPDALAILSQ GGFGNKDSDK TKLSSYDHGV TTNVEKRTFG FSSGGGERSS  660
SSNQSPSQDS DSRAQDTRSS LSLQLFTSSP EDESRPTVAS SRKYYSSASS NPVEDRSPSS  720
SPVMQELFPL QTSPETMRSK NHNNSSPSRT GCLPLELFGA SNRGTANPNF KGFGQQSGYA  780
SSGSDYSSPS LNSDAQDRTG KIVFKLLDKD PSQLPGTLRS EIYNWLSNIP SEMESYIRPG  840
CVVLSVYIAM SPAAWEQLER NLLQRLGVLL QNPQSDFWRN VRFIVNTGRQ LASHKNGRVR  900
CSKSWRTWNS PELISVSPVA VVAGAETSLV VRGRSLTNNG ISIRCTHMGS YMSMEVTGAA  960
CRQAVFDELN VNSFKVQNAQ PGFLGRCFIE VENGFRGDSF PLIIANASIC KELNRLEEEF  1020
HPKSQDTSEE QAQSTDRRPT SREEVLCFLN ELGWLFQKNQ TSELREQSDF SLARFKFLLV  1080
CSVERDYCAL IRTLLDMLVE RNLVNDELNT EALDMLAEIQ LLNRAVKRKS TKMVELLIHY  1140
SVNPSALDSS NNFVFLPNIT GPGGMTPLHL AACTSGSDDM VDLLTNDPQE IGLSSWNSLR  1200
DAAGQTPYSY AAIRNNHSYN SLVARKLADK RNKQVSLNIE NEIVDQKGLS KRLSSEMNKS  1260
SCASCATVAL KYQRRVSGSH RLFPTPIIHS MLAVATVCVC VCVFMHAFPI VRQGSHFSWG  1320
GLDYGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32134489184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g026870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269070.0AK226907.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 14, clone: RAFL09-16-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477355.10.0PREDICTED: squamosa promoter-binding-like protein 14 isoform X1
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLR0GUT00.0R0GUT0_9BRAS; Uncharacterized protein
STRINGXP_010477356.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]