PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g025010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 1163aa MW: 128113 Da PI: 5.7305 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31 | 4.6e-10 | 126 | 192 | 1 | 62 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvlt 62 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr +++ +l+ Csa17g025010.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDTTWTFRHIYRDEKSQLMLG 192 99*****************************954.4444.48*****************9999998875 PP | |||||||
2 | Auxin_resp | 118.4 | 5.9e-39 | 221 | 303 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F++++nPras+seFvv+++k++kal+ +vs+GmRf+m+feted+ rr++Gtv+g+sdldpvrW++S+Wr+L+ Csa17g025010.1 221 AAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQ 303 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-29 | 116 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-21 | 120 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.29E-10 | 125 | 192 | No hit | No description |
Pfam | PF02362 | 2.9E-8 | 126 | 191 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0013 | 126 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.2E-34 | 221 | 303 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.4E-9 | 1032 | 1120 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.801 | 1034 | 1127 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.77E-8 | 1048 | 1112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1163 aa Download sequence Send to blast |
MKAPSNGFLP NSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ 60 TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH 180 IYRDEKSQLM LGIRRANRQT PTLSSSVISS DSMHIGILAA AAHANANSSP FTIFFNPRAS 240 PSEFVVPLAK YNKALYAQVS LGMRFRMMFE TEDCGVRRYM GTVTGISDLD PVRWKGSQWR 300 NLQVGWDEST AGDRPSRVSI WEIEPVITPF YICPPPFFRP KYPRQPGMPD DELDMENAFK 360 RAMPWMGEEF GMKDAQSSMF PGLSLVQWMS MQQNNPLSGS ATPQLPAALS SYNLPNNFAS 420 NDPSKLAMPW MGEEFGMKDA QSSMFPGLSL VQWMSMQQNN PLSVSCQNPH QSTGFSQSQL 480 QQQSMLPNGA KMTHQNINSA GNKGSSQMTS FAQELQFQQQ LELHNSSQLL RNQQEQSSLH 540 SLQQSLSQNP QQLQMQQQSP KQSPSQQLQL HLLQKLQQQQ QQQQSIPPVS SSLQPQLSAM 600 QQTQSHQLQQ LLSSQNQQPL AHGNNNFSAS TFMQPPQIQV NHQQQGQMNN KPLVAPGRSH 660 SGHTDGEAPS CSTSPSANNT GHDNVSPTNF LSRNQQQGQA VSVSASDSVF ERASNPVQEL 720 YAKTDSRMNQ GMVNLKSAGE QFKFKGAVTD QIDVSTAGTT YCPDVVGSAQ QQQTFPLPSF 780 GFDGDCQSHH PRNNLAFASN LEAVTPDALY SQKDFQNLVP NYGNAPRDIE TELSSAAISS 840 QSFGIPSIPF KLXVSVSASD SVFERASNPV QELYAKTDSR MNQGMVNLKS AGEQFKFKGA 900 VTDQIDVSTA GTTYCPDVVG SAQQQQTFPL PSFGFDGDCQ SHHPRNNLAF ASNLEAVTPD 960 ALYSQKDFQN LVPNYGNAPR DIETELSSAA ISSQSFGIPS IPFKSGCSNE VGGINDSGIM 1020 NGGGLWPNQT QRMRTYTKVQ KRGSVGRSID VTRYSGYDEL RHDLARMFGI EGQLEDPLTS 1080 DWKLVYTDHE NDILLVGDDP WEEFVNCVQN IKILSSAEVQ QMSLDGDLAA IPATNQACSE 1140 TDSGNAWKVH YEDTSAAASF NR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-143 | 15 | 324 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g025010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493467 | 0.0 | AB493467.1 Arabidopsis thaliana At1g19220 mRNA for hypothetical protein, partial cds, clone: RAAt1g19220. | |||
GenBank | ATU53672 | 0.0 | U53672.2 Arabidopsis thaliana early auxin-induced IAA22 mRNA, complete cds. | |||
GenBank | AY008390 | 0.0 | AY008390.1 Arabidopsis thaliana ARF11/IAA22 gene, complete cds. | |||
GenBank | AY669794 | 0.0 | AY669794.1 Arabidopsis thaliana clone C105352 ARF19 (At1g19220) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T29M8 | 0.0 | AC069143.3 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010477125.1 | 0.0 | PREDICTED: auxin response factor 19 | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | R0IQP5 | 0.0 | R0IQP5_9BRAS; Auxin response factor | ||||
STRING | XP_010477125.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |